RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 NCBP1Q09161 790 aaKnown RBP11.95□□□□□ -0.5
PTPRE-205ENST00000463727 SPECC1Q5M775 1068 aa11.95□□□□□ -0.5
PTPRE-205ENST00000463727 ZKSCAN3Q9BRR0 538 aa11.95□□□□□ -0.5
PTPRE-205ENST00000463727 PODXL2Q9NZ53 605 aa11.95□□□□□ -0.5
PTPRE-205ENST00000463727 KIF23Q02241 960 aaPredicted RBP11.95□□□□□ -0.5
PTPRE-205ENST00000463727 PNOCQ13519 176 aa11.95□□□□□ -0.5
PTPRE-205ENST00000463727 RBM43Q6ZSC3 357 aaKnown RBP11.95□□□□□ -0.5
PTPRE-205ENST00000463727 AMOTL1Q8IY63 956 aa11.95□□□□□ -0.5
PTPRE-205ENST00000463727 DIS3L2Q8IYB7 885 aaKnown RBP11.95□□□□□ -0.5
PTPRE-205ENST00000463727 MTMR7Q9Y216 660 aa11.95□□□□□ -0.5
PTPRE-205ENST00000463727 PXDNQ92626 1479 aa11.95□□□□□ -0.5
PTPRE-205ENST00000463727 SYCP1Q15431 976 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 ZBTB38Q8NAP3 1195 aaPredicted RBP11.94□□□□□ -0.5
PTPRE-205ENST00000463727 KAT6BQ8WYB5 2073 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 ZMYM6O95789 1325 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 PALLDQ8WX93 1383 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 NBPF26B4DH59 902 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 KIF5CO60282 957 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 AFMP43652 599 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 HSP90B2PQ58FF3 399 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 RILPL1Q5EBL4 403 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 NBPF14Q5TI25 921 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 NBPF10Q6P3W6 841 aaKnown RBP11.94□□□□□ -0.5
PTPRE-205ENST00000463727 CATIPQ7Z7H3 387 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 NBPF15Q8N660 670 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 KIF20AO95235 890 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 CTDNEP1O95476 244 aa11.94□□□□□ -0.5
PTPRE-205ENST00000463727 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.94□□□□□ -0.5
PTPRE-205ENST00000463727 POLR3GO15318 223 aaPredicted RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 POLR2DO15514 142 aaKnown RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 ZNF710Q8N1W2 664 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 CCDC12Q8WUD4 166 aaPredicted RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 ESR2Q92731 530 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 BAG1Q99933 345 aaPredicted RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 IQSEC3Q9UPP2 1182 aaPredicted RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 TRIM75PA6NK02 468 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 PUM3Q15397 648 aaKnown RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 KIF4BQ2VIQ3 1234 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 APOA5Q6Q788 366 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 DZIP3Q86Y13 1208 aaKnown RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 NUTM2AQ8IVF1 878 aaPredicted RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 MIGA1Q8NAN2 632 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 CTCFLQ8NI51 663 aaPredicted RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 CLIC6Q96NY7 704 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 NOL10Q9BSC4 688 aaKnown RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 OVOS2A0A0G2JMS6 1433 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 A0A0U1RQG5 324 aaPredicted RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 PSDA5PKW4 1024 aaPredicted RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 PDE6AP16499 860 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 GNAT2P19087 354 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 CYP7A1P22680 504 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 ZNF142P52746 1687 aaPredicted RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 ETF1P62495 437 aaKnown RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 NAA30Q147X3 362 aaPredicted RBP11.93□□□□□ -0.5
PTPRE-205ENST00000463727 ERCC6LQ2NKX8 1250 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 DHX58Q96C10 678 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 AIFM3Q96NN9 605 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 ARMT1Q9H993 441 aa11.93□□□□□ -0.5
PTPRE-205ENST00000463727 CTDSPL2Q05D32 466 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 DMTNQ08495 405 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 TAF3Q5VWG9 929 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 DHX40Q8IX18 779 aaKnown RBP11.92□□□□□ -0.5
PTPRE-205ENST00000463727 LPIN2Q92539 896 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 NFE2L3Q9Y4A8 694 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 USP27XA6NNY8 438 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 EXOC5O00471 708 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 PDE8AO60658 829 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 GREM2Q9H772 168 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 ZSWIM4Q9H7M6 989 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 CABP5Q9NP86 173 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 CACNA1FO60840 1977 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 NALCNQ8IZF0 1738 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 A0A0G2JLW4 131 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 IKBKBO14920 756 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 ARHGAP6O43182 974 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 ERLIN1O75477 346 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 CAVIN4Q5BKX8 364 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 MLKLQ8NB16 471 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 ACBD3Q9H3P7 528 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 FANCLQ9NW38 375 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 MAGEC2Q9UBF1 373 aaPredicted RBP11.92□□□□□ -0.5
PTPRE-205ENST00000463727 KCNJ14Q9UNX9 436 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 PCDHA5Q9Y5H7 936 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 CHD2O14647 1828 aaKnown RBP11.92□□□□□ -0.5
PTPRE-205ENST00000463727 DEXIO95424 95 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 GABPB1Q06547 395 aaPredicted RBP11.92□□□□□ -0.5
PTPRE-205ENST00000463727 UBE3CQ15386 1083 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 TIGD1Q96MW7 591 aa11.92□□□□□ -0.5
PTPRE-205ENST00000463727 FMN2Q9NZ56 1722 aa11.91□□□□□ -0.5
PTPRE-205ENST00000463727 TCHHQ07283 1943 aa11.91□□□□□ -0.5
PTPRE-205ENST00000463727 PPP6R2O75170 966 aa11.91□□□□□ -0.5
PTPRE-205ENST00000463727 ADD2P35612 726 aa11.91□□□□□ -0.5
PTPRE-205ENST00000463727 TNNT3P45378 269 aaPredicted RBP11.91□□□□□ -0.5
PTPRE-205ENST00000463727 CTSWP56202 376 aa11.91□□□□□ -0.5
PTPRE-205ENST00000463727 NOSTRINQ8IVI9 506 aa11.91□□□□□ -0.5
PTPRE-205ENST00000463727 PPP1R13BQ96KQ4 1090 aa11.91□□□□□ -0.5
PTPRE-205ENST00000463727 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.91□□□□□ -0.5
PTPRE-205ENST00000463727 BTBD18B2RXH4 712 aa11.91□□□□□ -0.5
PTPRE-205ENST00000463727 PATL2C9JE40 543 aaKnown RBP11.91□□□□□ -0.5
PTPRE-205ENST00000463727 PDE8BO95263 885 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms