RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 HOOK2Q96ED9 719 aa20.07■□□□□ 0.8
COL7A1-204ENST00000462475 MEIS3Q99687 375 aa20.07■□□□□ 0.8
COL7A1-204ENST00000462475 API5Q9BZZ5 524 aaKnown RBP20.07■□□□□ 0.8
COL7A1-204ENST00000462475 CEP126Q9P2H0 1117 aa20.07■□□□□ 0.8
COL7A1-204ENST00000462475 MYH13Q9UKX3 1938 aa20.06■□□□□ 0.8
COL7A1-204ENST00000462475 IRF6O14896 467 aa20.06■□□□□ 0.8
COL7A1-204ENST00000462475 PHKA1P46020 1223 aa20.06■□□□□ 0.8
COL7A1-204ENST00000462475 NFIAQ12857 509 aa20.06■□□□□ 0.8
COL7A1-204ENST00000462475 DCAF15Q66K64 600 aa20.06■□□□□ 0.8
COL7A1-204ENST00000462475 CDC42EP5Q6NZY7 148 aa20.06■□□□□ 0.8
COL7A1-204ENST00000462475 ARMC5Q96C12 935 aa20.06■□□□□ 0.8
COL7A1-204ENST00000462475 ZNF341Q9BYN7 854 aa20.06■□□□□ 0.8
COL7A1-204ENST00000462475 CETPP11597 493 aa20.05■□□□□ 0.8
COL7A1-204ENST00000462475 ADORA1P30542 326 aa20.05■□□□□ 0.8
COL7A1-204ENST00000462475 INPP5BP32019 993 aa20.05■□□□□ 0.8
COL7A1-204ENST00000462475 IL15P40933 162 aaPredicted RBP20.05■□□□□ 0.8
COL7A1-204ENST00000462475 TCP10Q12799 353 aa20.05■□□□□ 0.8
COL7A1-204ENST00000462475 PPIL2Q13356 520 aa20.05■□□□□ 0.8
COL7A1-204ENST00000462475 INTS3Q68E01 1043 aaKnown RBP20.05■□□□□ 0.8
COL7A1-204ENST00000462475 FAM151AQ8WW52 585 aa20.05■□□□□ 0.8
COL7A1-204ENST00000462475 GNL3LQ9NVN8 582 aaKnown RBP20.05■□□□□ 0.8
COL7A1-204ENST00000462475 BTBD19C9JJ37 291 aa20.04■□□□□ 0.8
COL7A1-204ENST00000462475 LDHBP07195 334 aaKnown RBP20.04■□□□□ 0.8
COL7A1-204ENST00000462475 SNAPC2Q13487 334 aa20.04■□□□□ 0.8
COL7A1-204ENST00000462475 COPRSQ9NQ92 184 aa20.04■□□□□ 0.8
COL7A1-204ENST00000462475 SALL1Q9NSC2 1324 aa20.03■□□□□ 0.8
COL7A1-204ENST00000462475 RARSP54136 660 aaKnown RBP20.03■□□□□ 0.8
COL7A1-204ENST00000462475 FAM198AQ9UFP1 575 aa20.03■□□□□ 0.8
COL7A1-204ENST00000462475 DENND2AQ9ULE3 1009 aa20.03■□□□□ 0.8
COL7A1-204ENST00000462475 SEMA3EO15041 775 aa20.02■□□□□ 0.8
COL7A1-204ENST00000462475 TLR2O60603 784 aa20.02■□□□□ 0.8
COL7A1-204ENST00000462475 PPATQ06203 517 aa20.02■□□□□ 0.8
COL7A1-204ENST00000462475 CCDC102BQ68D86 513 aa20.02■□□□□ 0.8
COL7A1-204ENST00000462475 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.02■□□□□ 0.8
COL7A1-204ENST00000462475 ARHGAP39Q9C0H5 1083 aa20.02■□□□□ 0.8
COL7A1-204ENST00000462475 ZCCHC17Q9NP64 241 aaKnown RBP20.02■□□□□ 0.8
COL7A1-204ENST00000462475 USP40Q9NVE5 1235 aa20.02■□□□□ 0.8
COL7A1-204ENST00000462475 PTCH2Q9Y6C5 1203 aa20.02■□□□□ 0.8
COL7A1-204ENST00000462475 ZFPM1Q8IX07 1006 aa20.01■□□□□ 0.79
COL7A1-204ENST00000462475 ZNF112Q9UJU3 913 aa20.01■□□□□ 0.79
COL7A1-204ENST00000462475 HDAC5Q9UQL6 1122 aa20.01■□□□□ 0.79
COL7A1-204ENST00000462475 ATRNL1Q5VV63 1379 aa20■□□□□ 0.79
COL7A1-204ENST00000462475 WDHD1O75717 1129 aaPredicted RBP20■□□□□ 0.79
COL7A1-204ENST00000462475 RASGRF1Q13972 1273 aa20■□□□□ 0.79
COL7A1-204ENST00000462475 ZNF333Q96JL9 665 aa20■□□□□ 0.79
COL7A1-204ENST00000462475 RBBP6Q7Z6E9 1792 aaKnown RBP20■□□□□ 0.79
COL7A1-204ENST00000462475 ZSWIM8A7E2V4 1837 aa19.99■□□□□ 0.79
COL7A1-204ENST00000462475 RFX7Q2KHR2 1363 aa19.99■□□□□ 0.79
COL7A1-204ENST00000462475 ZBTB22O15209 634 aa19.99■□□□□ 0.79
COL7A1-204ENST00000462475 EN2P19622 333 aaPredicted RBP19.99■□□□□ 0.79
COL7A1-204ENST00000462475 TIMM10P62072 90 aa19.99■□□□□ 0.79
COL7A1-204ENST00000462475 ARHGEF6Q15052 776 aa19.99■□□□□ 0.79
COL7A1-204ENST00000462475 NOL9Q5SY16 702 aaKnown RBP19.99■□□□□ 0.79
COL7A1-204ENST00000462475 GAKO14976 1311 aa19.99■□□□□ 0.79
COL7A1-204ENST00000462475 CCER2I3L3R5 266 aa19.98■□□□□ 0.79
COL7A1-204ENST00000462475 SRGAP3O43295 1099 aa19.98■□□□□ 0.79
COL7A1-204ENST00000462475 RGS3P49796 1198 aa19.98■□□□□ 0.79
COL7A1-204ENST00000462475 LACTBP83111 547 aaPredicted RBP19.98■□□□□ 0.79
COL7A1-204ENST00000462475 SLC9C1Q4G0N8 1177 aa19.98■□□□□ 0.79
COL7A1-204ENST00000462475 KCNH4Q9UQ05 1017 aa19.98■□□□□ 0.79
COL7A1-204ENST00000462475 KIAA0100Q14667 2235 aaKnown RBP19.98■□□□□ 0.79
COL7A1-204ENST00000462475 A0A1B0GUL7 405 aa19.97■□□□□ 0.79
COL7A1-204ENST00000462475 TFCP2Q12800 502 aa19.97■□□□□ 0.79
COL7A1-204ENST00000462475 MTX1Q13505 466 aa19.97■□□□□ 0.79
COL7A1-204ENST00000462475 MOGSQ13724 837 aa19.97■□□□□ 0.79
COL7A1-204ENST00000462475 ANKRD23Q86SG2 305 aa19.97■□□□□ 0.79
COL7A1-204ENST00000462475 DZIP1Q86YF9 867 aaKnown RBP19.97■□□□□ 0.79
COL7A1-204ENST00000462475 ZGPATQ8N5A5 531 aaKnown RBP19.97■□□□□ 0.79
COL7A1-204ENST00000462475 ARHGAP45Q92619 1136 aa19.97■□□□□ 0.79
COL7A1-204ENST00000462475 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.97■□□□□ 0.79
COL7A1-204ENST00000462475 PDHXO00330 501 aa19.96■□□□□ 0.79
COL7A1-204ENST00000462475 ECM2O94769 699 aaPredicted RBP19.96■□□□□ 0.79
COL7A1-204ENST00000462475 GNAI3P08754 354 aa19.96■□□□□ 0.79
COL7A1-204ENST00000462475 KIF22Q14807 665 aa19.96■□□□□ 0.79
COL7A1-204ENST00000462475 C17orf99Q6UX52 265 aa19.96■□□□□ 0.79
COL7A1-204ENST00000462475 XAGE2Q96GT9 111 aa19.96■□□□□ 0.79
COL7A1-204ENST00000462475 IDI2Q9BXS1 227 aa19.96■□□□□ 0.79
COL7A1-204ENST00000462475 ABCF2Q9UG63 623 aa19.96■□□□□ 0.79
COL7A1-204ENST00000462475 CPA4Q9UI42 421 aa19.96■□□□□ 0.79
COL7A1-204ENST00000462475 TNNQ9UQP3 1299 aa19.96■□□□□ 0.79
COL7A1-204ENST00000462475 PDS5AQ29RF7 1337 aaKnown RBP19.96■□□□□ 0.79
COL7A1-204ENST00000462475 ADGRA2Q96PE1 1338 aa19.96■□□□□ 0.79
COL7A1-204ENST00000462475 ENTPD3O75355 529 aa19.95■□□□□ 0.78
COL7A1-204ENST00000462475 MYCP01106 439 aaPredicted RBP19.95■□□□□ 0.78
COL7A1-204ENST00000462475 CTGFP29279 349 aa19.95■□□□□ 0.78
COL7A1-204ENST00000462475 SH3BP5LQ7L8J4 393 aa19.95■□□□□ 0.78
COL7A1-204ENST00000462475 SH3TC2Q8TF17 1288 aa19.95■□□□□ 0.78
COL7A1-204ENST00000462475 TMEM106CQ9BVX2 250 aa19.95■□□□□ 0.78
COL7A1-204ENST00000462475 PHF20L1A8MW92 1017 aa19.94■□□□□ 0.78
COL7A1-204ENST00000462475 SLURP2P0DP57 97 aa19.94■□□□□ 0.78
COL7A1-204ENST00000462475 TRIM27P14373 513 aa19.94■□□□□ 0.78
COL7A1-204ENST00000462475 MVPQ14764 893 aaKnown RBP19.94■□□□□ 0.78
COL7A1-204ENST00000462475 NBPF11Q86T75 865 aa19.94■□□□□ 0.78
COL7A1-204ENST00000462475 DDX4Q9NQI0 724 aaKnown RBP19.94■□□□□ 0.78
COL7A1-204ENST00000462475 AKAP2Q9Y2D5 859 aa19.94■□□□□ 0.78
COL7A1-204ENST00000462475 DOCK2Q92608 1830 aa19.93■□□□□ 0.78
COL7A1-204ENST00000462475 BTDP43251 543 aa19.93■□□□□ 0.78
COL7A1-204ENST00000462475 MYH2Q9UKX2 1941 aa19.93■□□□□ 0.78
COL7A1-204ENST00000462475 MROH7-TTC4A0A0A0MT08 1334 aa19.93■□□□□ 0.78
COL7A1-204ENST00000462475 AK9Q5TCS8 1911 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 126.2 ms