RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 CCDC87Q9NVE4 849 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 STK26Q9P289 416 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 DCTN4Q9UJW0 460 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 TBX22Q9Y458 520 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 PTCH1Q13635 1447 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 FAM135BQ49AJ0 1406 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 PIK3R4Q99570 1358 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 ROBO2Q9HCK4 1378 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 KIF7Q2M1P5 1343 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 CENPJQ9HC77 1338 aaPredicted RBP6.29□□□□□ -1.4
CSMD3-205ENST00000462254 A6NHS1 94 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 UBAP1LF5GYI3 381 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 EGFRP00533 1210 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 PDGFAP04085 211 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 MAP3K10Q02779 954 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 TBC1D8BQ0IIM8 1120 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 AAMPQ13685 434 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 EAPPQ56P03 285 aaPredicted RBP6.29□□□□□ -1.4
CSMD3-205ENST00000462254 MON2Q7Z3U7 1717 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 GLYCTKQ8IVS8 523 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 DHX37Q8IY37 1157 aaKnown RBP6.29□□□□□ -1.4
CSMD3-205ENST00000462254 GGNBP2Q9H3C7 697 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 LRRC4BQ9NT99 713 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 POLIQ9UNA4 740 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 ANKRD26Q9UPS8 1709 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 KIF20BQ96Q89 1820 aa6.29□□□□□ -1.4
CSMD3-205ENST00000462254 NKTRP30414 1462 aaKnown RBP6.28□□□□□ -1.4
CSMD3-205ENST00000462254 RARAP10276 462 aa6.28□□□□□ -1.4
CSMD3-205ENST00000462254 TNFRSF25Q93038 417 aa6.28□□□□□ -1.4
CSMD3-205ENST00000462254 PRAM1Q96QH2 718 aa6.28□□□□□ -1.4
CSMD3-205ENST00000462254 C11orf16Q9NQ32 467 aa6.28□□□□□ -1.4
CSMD3-205ENST00000462254 FAM13BQ9NYF5 915 aa6.28□□□□□ -1.4
CSMD3-205ENST00000462254 ADAMTS8Q9UP79 889 aa6.28□□□□□ -1.4
CSMD3-205ENST00000462254 TMA7Q9Y2S6 64 aaKnown RBP6.28□□□□□ -1.4
CSMD3-205ENST00000462254 CDC42BPGQ6DT37 1551 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 ELOA3CA0A087WX78 387 aaPredicted RBP6.27□□□□□ -1.41
CSMD3-205ENST00000462254 ELOA3DA6NLF2 546 aaPredicted RBP6.27□□□□□ -1.41
CSMD3-205ENST00000462254 ADARB2-AS1A8MUL3 147 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 ZBTB42B2RXF5 422 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 MMP20O60882 483 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 MAP3K6O95382 1288 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 MZF1P28698 734 aaPredicted RBP6.27□□□□□ -1.41
CSMD3-205ENST00000462254 RAD51AP2Q09MP3 1159 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 SAFB2Q14151 953 aaKnown RBP eCLIP6.27□□□□□ -1.41
CSMD3-205ENST00000462254 ELOA3BQ3SY89 546 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 ALKBH2Q6NS38 261 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 WAPLQ7Z5K2 1190 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 ELOA3Q8NG57 546 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 BTBD6Q96KE9 485 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 TANGO6Q9C0B7 1094 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 STK17AQ9UEE5 414 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 NRKQ7Z2Y5 1582 aa6.27□□□□□ -1.41
CSMD3-205ENST00000462254 HOXB4P17483 251 aaPredicted RBP6.26□□□□□ -1.41
CSMD3-205ENST00000462254 KCNA6P17658 529 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 ADH7P40394 386 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 TMF1P82094 1093 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 C8orf34Q49A92 452 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 DHX32Q7L7V1 743 aaKnown RBP6.26□□□□□ -1.41
CSMD3-205ENST00000462254 NLRP13Q86W25 1043 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 SLC43A3Q8NBI5 491 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 NEDD1Q8NHV4 660 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 ARMC5Q96C12 935 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 UBE2OQ9C0C9 1292 aaKnown RBP6.26□□□□□ -1.41
CSMD3-205ENST00000462254 LNPKQ9C0E8 428 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 EFCC1Q9HA90 598 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 DNAJB12Q9NXW2 375 aaKnown RBP6.26□□□□□ -1.41
CSMD3-205ENST00000462254 TMEM63CQ9P1W3 806 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 ATP7BP35670 1465 aa6.26□□□□□ -1.41
CSMD3-205ENST00000462254 AMPD1P23109 780 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 SNRPNP63162 240 aaKnown RBP6.25□□□□□ -1.41
CSMD3-205ENST00000462254 MLLT1Q03111 559 aaPredicted RBP6.25□□□□□ -1.41
CSMD3-205ENST00000462254 DDX10Q13206 875 aaKnown RBP6.25□□□□□ -1.41
CSMD3-205ENST00000462254 ZNF662Q6ZS27 426 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 CHSY3Q70JA7 882 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 TINF2Q9BSI4 451 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 ELP3Q9H9T3 547 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 ENAMQ9NRM1 1142 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 TLR7Q9NYK1 1049 aaKnown RBP6.25□□□□□ -1.41
CSMD3-205ENST00000462254 POGKQ9P215 609 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 NAGPAQ9UK23 515 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 BRPF3Q9ULD4 1205 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 SLC6A14Q9UN76 642 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 FNDC3AQ9Y2H6 1198 aaKnown RBP6.25□□□□□ -1.41
CSMD3-205ENST00000462254 STARD13Q9Y3M8 1113 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 MARF1Q9Y4F3 1742 aaKnown RBP6.25□□□□□ -1.41
CSMD3-205ENST00000462254 LTBP4Q8N2S1 1624 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 ADGRL3Q9HAR2 1447 aa6.25□□□□□ -1.41
CSMD3-205ENST00000462254 CD163L1Q9NR16 1453 aa6.24□□□□□ -1.41
CSMD3-205ENST00000462254 TLDC2A0PJX2 215 aa6.24□□□□□ -1.41
CSMD3-205ENST00000462254 CYP2E1P05181 493 aaPredicted RBP6.24□□□□□ -1.41
CSMD3-205ENST00000462254 LDLRAD1Q5T700 205 aa6.24□□□□□ -1.41
CSMD3-205ENST00000462254 HFE2Q6ZVN8 426 aa6.24□□□□□ -1.41
CSMD3-205ENST00000462254 ZNF438Q7Z4V0 828 aa6.24□□□□□ -1.41
CSMD3-205ENST00000462254 GJD3Q8N144 294 aa6.24□□□□□ -1.41
CSMD3-205ENST00000462254 TRPM4Q8TD43 1214 aa6.24□□□□□ -1.41
CSMD3-205ENST00000462254 DNAJC2Q99543 621 aaKnown RBP6.24□□□□□ -1.41
CSMD3-205ENST00000462254 NLRP2Q9NX02 1062 aa6.24□□□□□ -1.41
CSMD3-205ENST00000462254 CNTN3Q9P232 1028 aa6.24□□□□□ -1.41
CSMD3-205ENST00000462254 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.24□□□□□ -1.41
CSMD3-205ENST00000462254 LRRC7Q96NW7 1537 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms