RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 MYSM1Q5VVJ2 828 aa12.71□□□□□ -0.37
RFX3-211ENST00000458034 DZIP3Q86Y13 1208 aaKnown RBP12.71□□□□□ -0.37
RFX3-211ENST00000458034 FMR1NBQ8N0W7 255 aaPredicted RBP12.71□□□□□ -0.37
RFX3-211ENST00000458034 LINC00301Q8NCQ3 95 aa12.71□□□□□ -0.37
RFX3-211ENST00000458034 SDF4Q9BRK5 362 aa12.71□□□□□ -0.37
RFX3-211ENST00000458034 CDCA7Q9BWT1 371 aaPredicted RBP12.71□□□□□ -0.37
RFX3-211ENST00000458034 CNNM2Q9H8M5 875 aa12.71□□□□□ -0.37
RFX3-211ENST00000458034 FAM13BQ9NYF5 915 aa12.71□□□□□ -0.37
RFX3-211ENST00000458034 PCDHA7Q9UN72 937 aa12.71□□□□□ -0.37
RFX3-211ENST00000458034 HPS5Q9UPZ3 1129 aa12.71□□□□□ -0.37
RFX3-211ENST00000458034 ZNF335Q9H4Z2 1342 aaPredicted RBP12.7□□□□□ -0.38
RFX3-211ENST00000458034 ZNF532Q9HCE3 1301 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 STK36Q9NRP7 1315 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 PDE6AP16499 860 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 GNAT2P19087 354 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 GNL2Q13823 731 aaKnown RBP12.7□□□□□ -0.38
RFX3-211ENST00000458034 ANO1Q5XXA6 986 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 CCDC102BQ68D86 513 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 ILDR1Q86SU0 546 aaPredicted RBP12.7□□□□□ -0.38
RFX3-211ENST00000458034 ZNF34Q8IZ26 560 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 WASF1Q92558 559 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 AIDAQ96BJ3 306 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 BPIFA3Q9BQP9 254 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 CREBZFQ9NS37 354 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 ZBTB1Q9Y2K1 713 aa12.7□□□□□ -0.38
RFX3-211ENST00000458034 SMTNL1A8MU46 457 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 PATL2C9JE40 543 aaKnown RBP12.69□□□□□ -0.38
RFX3-211ENST00000458034 POTEB2H3BUK9 544 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 ZBTB43O43298 467 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 FGFR2P21802 821 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 GSDMDP57764 484 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 RBM10P98175 930 aaKnown RBP12.69□□□□□ -0.38
RFX3-211ENST00000458034 KIF23Q02241 960 aaPredicted RBP12.69□□□□□ -0.38
RFX3-211ENST00000458034 PARP10Q53GL7 1025 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 NFXL1Q6ZNB6 911 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 C11orf57Q6ZUT1 292 aaPredicted RBP12.69□□□□□ -0.38
RFX3-211ENST00000458034 TIGD1Q96MW7 591 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 ALG1Q9BT22 464 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 MTA3Q9BTC8 594 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 KRT23Q9C075 422 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 FTOQ9C0B1 505 aaKnown RBP eCLIP12.69□□□□□ -0.38
RFX3-211ENST00000458034 PIH1D3Q9NQM4 214 aaKnown RBP12.69□□□□□ -0.38
RFX3-211ENST00000458034 COL16A1Q07092 1604 aaPredicted RBP12.69□□□□□ -0.38
RFX3-211ENST00000458034 BCORQ6W2J9 1755 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 RTL9Q8NET4 1388 aa12.69□□□□□ -0.38
RFX3-211ENST00000458034 GOLGA8AA7E2F4 631 aa12.68□□□□□ -0.38
RFX3-211ENST00000458034 PPP6R2O75170 966 aa12.68□□□□□ -0.38
RFX3-211ENST00000458034 CMA1P23946 247 aa12.68□□□□□ -0.38
RFX3-211ENST00000458034 PHKA1P46020 1223 aa12.68□□□□□ -0.38
RFX3-211ENST00000458034 RBM6P78332 1123 aaKnown RBP12.68□□□□□ -0.38
RFX3-211ENST00000458034 TBC1D10CQ8IV04 446 aa12.68□□□□□ -0.38
RFX3-211ENST00000458034 C17orf53Q8N3J3 647 aaPredicted RBP12.68□□□□□ -0.38
RFX3-211ENST00000458034 MPHOSPH8Q99549 860 aa12.68□□□□□ -0.38
RFX3-211ENST00000458034 NACAP1Q9BZK3 213 aa12.68□□□□□ -0.38
RFX3-211ENST00000458034 NAPBQ9H115 298 aa12.68□□□□□ -0.38
RFX3-211ENST00000458034 GPHNQ9NQX3 736 aaPredicted RBP12.68□□□□□ -0.38
RFX3-211ENST00000458034 IMPACTQ9P2X3 320 aa12.68□□□□□ -0.38
RFX3-211ENST00000458034 CLIC4Q9Y696 253 aa12.68□□□□□ -0.38
RFX3-211ENST00000458034 AHDC1Q5TGY3 1603 aaPredicted RBP12.68□□□□□ -0.38
RFX3-211ENST00000458034 NID2Q14112 1375 aa12.68□□□□□ -0.38
RFX3-211ENST00000458034 MYH6P13533 1939 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 TCRBV5S4A2TA0A5A2 114 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 CCDC69A6NI79 296 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 NRDCO43847 1150 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 POLR3DP05423 398 aaPredicted RBP12.67□□□□□ -0.38
RFX3-211ENST00000458034 SLC3A2P08195 630 aaKnown RBP12.67□□□□□ -0.38
RFX3-211ENST00000458034 IGHMBP2P38935 993 aaKnown RBP12.67□□□□□ -0.38
RFX3-211ENST00000458034 IARSP41252 1262 aaKnown RBP12.67□□□□□ -0.38
RFX3-211ENST00000458034 LIFRP42702 1097 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 NLRP12P59046 1061 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 SART3Q15020 963 aaKnown RBP12.67□□□□□ -0.38
RFX3-211ENST00000458034 CCDC152Q4G0S7 254 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 TMEM67Q5HYA8 995 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 APOA5Q6Q788 366 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 PI16Q6UXB8 463 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 SGMS1Q86VZ5 419 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 DHX40Q8IX18 779 aaKnown RBP12.67□□□□□ -0.38
RFX3-211ENST00000458034 AOPEPQ8N6M6 819 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 SPATA5Q8NB90 893 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 STRBPQ96SI9 672 aaKnown RBP12.67□□□□□ -0.38
RFX3-211ENST00000458034 UTP14AQ9BVJ6 771 aaKnown RBP12.67□□□□□ -0.38
RFX3-211ENST00000458034 KIAA1468Q9P260 1216 aa12.67□□□□□ -0.38
RFX3-211ENST00000458034 A0A1B0GVL5 298 aa12.66□□□□□ -0.38
RFX3-211ENST00000458034 NDUFA8P51970 172 aa12.66□□□□□ -0.38
RFX3-211ENST00000458034 SSRP1Q08945 709 aaKnown RBP12.66□□□□□ -0.38
RFX3-211ENST00000458034 SLC39A14Q15043 492 aa12.66□□□□□ -0.38
RFX3-211ENST00000458034 SAFBQ15424 915 aaKnown RBP eCLIP12.66□□□□□ -0.38
RFX3-211ENST00000458034 CYB5R4Q7L1T6 521 aa12.66□□□□□ -0.38
RFX3-211ENST00000458034 SYNE4Q8N205 404 aa12.66□□□□□ -0.38
RFX3-211ENST00000458034 SYTL4Q96C24 671 aaPredicted RBP12.66□□□□□ -0.38
RFX3-211ENST00000458034 RNF41Q9H4P4 317 aaPredicted RBP12.66□□□□□ -0.38
RFX3-211ENST00000458034 CCDC87Q9NVE4 849 aa12.66□□□□□ -0.38
RFX3-211ENST00000458034 WWC3Q9ULE0 1092 aa12.66□□□□□ -0.38
RFX3-211ENST00000458034 PAXBP1Q9Y5B6 917 aa12.66□□□□□ -0.38
RFX3-211ENST00000458034 NRAPQ86VF7 1730 aa12.65□□□□□ -0.38
RFX3-211ENST00000458034 UBN2Q6ZU65 1347 aa12.65□□□□□ -0.38
RFX3-211ENST00000458034 PNPLA7Q6ZV29 1317 aa12.65□□□□□ -0.38
RFX3-211ENST00000458034 ERICH2A1L162 156 aa12.65□□□□□ -0.38
RFX3-211ENST00000458034 B4E1Z4 1266 aa12.65□□□□□ -0.38
RFX3-211ENST00000458034 KIF2AO00139 706 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms