RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 WNK4Q96J92 1243 aa26.15■■□□□ 1.78
HMGB3-205ENST00000455596 NOP58Q9Y2X3 529 aaKnown RBP26.15■■□□□ 1.78
HMGB3-205ENST00000455596 RPAP1Q9BWH6 1393 aaPredicted RBP26.15■■□□□ 1.78
HMGB3-205ENST00000455596 ARID4AP29374 1257 aaPredicted RBP26.14■■□□□ 1.78
HMGB3-205ENST00000455596 TNNI3KQ59H18 835 aa26.14■■□□□ 1.78
HMGB3-205ENST00000455596 CDC42EP5Q6NZY7 148 aa26.14■■□□□ 1.78
HMGB3-205ENST00000455596 CEP85Q6P2H3 762 aa26.14■■□□□ 1.78
HMGB3-205ENST00000455596 HOOK2Q96ED9 719 aa26.14■■□□□ 1.78
HMGB3-205ENST00000455596 FPGT-TNNI3KV9GXZ4 949 aa26.14■■□□□ 1.78
HMGB3-205ENST00000455596 DOCK2Q92608 1830 aa26.14■■□□□ 1.77
HMGB3-205ENST00000455596 MANSC4A6NHS7 340 aaPredicted RBP26.13■■□□□ 1.77
HMGB3-205ENST00000455596 SLF2Q8IX21 1173 aa26.13■■□□□ 1.77
HMGB3-205ENST00000455596 SPATA5Q8NB90 893 aa26.13■■□□□ 1.77
HMGB3-205ENST00000455596 HMG20BQ9P0W2 317 aa26.13■■□□□ 1.77
HMGB3-205ENST00000455596 UQCRFS1P1P0C7P4 283 aa26.12■■□□□ 1.77
HMGB3-205ENST00000455596 ERICH6Q7L0X2 663 aa26.12■■□□□ 1.77
HMGB3-205ENST00000455596 FAM151AQ8WW52 585 aa26.12■■□□□ 1.77
HMGB3-205ENST00000455596 USP40Q9NVE5 1235 aa26.12■■□□□ 1.77
HMGB3-205ENST00000455596 MYO5AQ9Y4I1 1855 aaKnown RBP26.11■■□□□ 1.77
HMGB3-205ENST00000455596 MAST2Q6P0Q8 1798 aa26.11■■□□□ 1.77
HMGB3-205ENST00000455596 INHBEP58166 350 aa26.11■■□□□ 1.77
HMGB3-205ENST00000455596 DDX19BQ9UMR2 479 aa26.11■■□□□ 1.77
HMGB3-205ENST00000455596 GAKO14976 1311 aa26.11■■□□□ 1.77
HMGB3-205ENST00000455596 MAP3K9P80192 1104 aa26.1■■□□□ 1.77
HMGB3-205ENST00000455596 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.1■■□□□ 1.77
HMGB3-205ENST00000455596 ELP3Q9H9T3 547 aa26.1■■□□□ 1.77
HMGB3-205ENST00000455596 COG6Q9Y2V7 657 aa26.1■■□□□ 1.77
HMGB3-205ENST00000455596 MCAMP43121 646 aa26.09■■□□□ 1.77
HMGB3-205ENST00000455596 TCP10Q12799 353 aa26.09■■□□□ 1.77
HMGB3-205ENST00000455596 CCDC158Q5M9N0 1113 aa26.09■■□□□ 1.77
HMGB3-205ENST00000455596 TTC39AQ5SRH9 613 aa26.09■■□□□ 1.77
HMGB3-205ENST00000455596 DCAF15Q66K64 600 aa26.09■■□□□ 1.77
HMGB3-205ENST00000455596 PI16Q6UXB8 463 aa26.09■■□□□ 1.77
HMGB3-205ENST00000455596 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.09■■□□□ 1.77
HMGB3-205ENST00000455596 FAM163AQ96GL9 167 aaPredicted RBP26.09■■□□□ 1.77
HMGB3-205ENST00000455596 DBNDD2Q9BQY9 259 aa26.09■■□□□ 1.77
HMGB3-205ENST00000455596 CSADQ9Y600 493 aa26.09■■□□□ 1.77
HMGB3-205ENST00000455596 TBC1D8O95759 1140 aa26.08■■□□□ 1.77
HMGB3-205ENST00000455596 NFIAQ12857 509 aa26.08■■□□□ 1.77
HMGB3-205ENST00000455596 VGLL4Q14135 290 aa26.08■■□□□ 1.77
HMGB3-205ENST00000455596 OPTNQ96CV9 577 aa26.08■■□□□ 1.77
HMGB3-205ENST00000455596 ABHD8Q96I13 439 aa26.08■■□□□ 1.77
HMGB3-205ENST00000455596 MROH7-TTC4A0A0A0MT08 1334 aa26.08■■□□□ 1.77
HMGB3-205ENST00000455596 ALDH1A1P00352 501 aa26.07■■□□□ 1.76
HMGB3-205ENST00000455596 GJA5P36382 358 aa26.07■■□□□ 1.76
HMGB3-205ENST00000455596 MECOMQ03112 1051 aa26.07■■□□□ 1.76
HMGB3-205ENST00000455596 CHMP4BQ9H444 224 aaKnown RBP26.07■■□□□ 1.76
HMGB3-205ENST00000455596 FAM198AQ9UFP1 575 aa26.07■■□□□ 1.76
HMGB3-205ENST00000455596 DGKZQ13574 1117 aa26.06■■□□□ 1.76
HMGB3-205ENST00000455596 TBC1D9Q6ZT07 1266 aa26.06■■□□□ 1.76
HMGB3-205ENST00000455596 IFNL1Q8IU54 200 aa26.06■■□□□ 1.76
HMGB3-205ENST00000455596 ERC1Q8IUD2 1116 aa26.06■■□□□ 1.76
HMGB3-205ENST00000455596 WRNIP1Q96S55 665 aa26.06■■□□□ 1.76
HMGB3-205ENST00000455596 BTDP43251 543 aa26.05■■□□□ 1.76
HMGB3-205ENST00000455596 GSTO1P78417 241 aa26.05■■□□□ 1.76
HMGB3-205ENST00000455596 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.05■■□□□ 1.76
HMGB3-205ENST00000455596 CFHR5Q9BXR6 569 aa26.05■■□□□ 1.76
HMGB3-205ENST00000455596 IDI2Q9BXS1 227 aa26.05■■□□□ 1.76
HMGB3-205ENST00000455596 ZNF341Q9BYN7 854 aa26.05■■□□□ 1.76
HMGB3-205ENST00000455596 MCOLN1Q9GZU1 580 aa26.05■■□□□ 1.76
HMGB3-205ENST00000455596 RAI14Q9P0K7 980 aa26.05■■□□□ 1.76
HMGB3-205ENST00000455596 EXOC6BQ9Y2D4 811 aa26.05■■□□□ 1.76
HMGB3-205ENST00000455596 LDHCP07864 332 aa26.04■■□□□ 1.76
HMGB3-205ENST00000455596 HSP90AB4PQ58FF6 505 aa26.04■■□□□ 1.76
HMGB3-205ENST00000455596 MIGA2Q7L4E1 593 aa26.04■■□□□ 1.76
HMGB3-205ENST00000455596 RPAP2Q8IXW5 612 aaPredicted RBP26.04■■□□□ 1.76
HMGB3-205ENST00000455596 ZBTB40Q9NUA8 1239 aa26.04■■□□□ 1.76
HMGB3-205ENST00000455596 LRP2BPQ9P2M1 347 aa26.04■■□□□ 1.76
HMGB3-205ENST00000455596 GPR75-ASB3A0A0A6YYF3 556 aa26.03■■□□□ 1.76
HMGB3-205ENST00000455596 ENTPD3O75355 529 aa26.03■■□□□ 1.76
HMGB3-205ENST00000455596 ZNF384Q8TF68 577 aa26.03■■□□□ 1.76
HMGB3-205ENST00000455596 NSUN4Q96CB9 384 aaKnown RBP26.03■■□□□ 1.76
HMGB3-205ENST00000455596 ZNF512BQ96KM6 892 aaPredicted RBP26.03■■□□□ 1.76
HMGB3-205ENST00000455596 DBNLQ9UJU6 430 aaKnown RBP26.03■■□□□ 1.76
HMGB3-205ENST00000455596 RFX7Q2KHR2 1363 aa26.03■■□□□ 1.76
HMGB3-205ENST00000455596 CDK5RAP2Q96SN8 1893 aa26.02■■□□□ 1.76
HMGB3-205ENST00000455596 RGS3P49796 1198 aa26.02■■□□□ 1.76
HMGB3-205ENST00000455596 NOM1Q5C9Z4 860 aaKnown RBP26.02■■□□□ 1.76
HMGB3-205ENST00000455596 OTUD7BQ6GQQ9 843 aa26.02■■□□□ 1.76
HMGB3-205ENST00000455596 CNKSR2Q8WXI2 1034 aa26.02■■□□□ 1.76
HMGB3-205ENST00000455596 EAF2Q96CJ1 260 aaPredicted RBP26.02■■□□□ 1.76
HMGB3-205ENST00000455596 CCDC8Q9H0W5 538 aaPredicted RBP26.02■■□□□ 1.76
HMGB3-205ENST00000455596 SNRKQ9NRH2 765 aa26.02■■□□□ 1.76
HMGB3-205ENST00000455596 SNCAIPQ9Y6H5 919 aa26.02■■□□□ 1.76
HMGB3-205ENST00000455596 SPDYE5A6NIY4 337 aa26.01■■□□□ 1.75
HMGB3-205ENST00000455596 GPR25O00155 361 aa26.01■■□□□ 1.75
HMGB3-205ENST00000455596 IGF2BP3O00425 579 aaKnown RBP eCLIP26.01■■□□□ 1.75
HMGB3-205ENST00000455596 HMMRO75330 724 aa26.01■■□□□ 1.75
HMGB3-205ENST00000455596 PDE3AQ14432 1141 aa26.01■■□□□ 1.75
HMGB3-205ENST00000455596 ZFPM1Q8IX07 1006 aa26.01■■□□□ 1.75
HMGB3-205ENST00000455596 ZNF296Q8WUU4 475 aaPredicted RBP26.01■■□□□ 1.75
HMGB3-205ENST00000455596 ZKSCAN4Q969J2 545 aaPredicted RBP26.01■■□□□ 1.75
HMGB3-205ENST00000455596 OTUD5Q96G74 571 aa26.01■■□□□ 1.75
HMGB3-205ENST00000455596 TLR7Q9NYK1 1049 aaKnown RBP26.01■■□□□ 1.75
HMGB3-205ENST00000455596 FOCADQ5VW36 1801 aa26■■□□□ 1.75
HMGB3-205ENST00000455596 TESPA1A2RU30 521 aaPredicted RBP26■■□□□ 1.75
HMGB3-205ENST00000455596 ERO1BQ86YB8 467 aa26■■□□□ 1.75
HMGB3-205ENST00000455596 WDHD1O75717 1129 aaPredicted RBP25.99■■□□□ 1.75
HMGB3-205ENST00000455596 GTF2A2P52657 109 aa25.99■■□□□ 1.75
HMGB3-205ENST00000455596 ZSCAN29Q8IWY8 852 aaPredicted RBP25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms