RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 APBB1IPQ7Z5R6 666 aaPredicted RBP8.73□□□□□ -1.01
NEDD9-204ENST00000448183 TMTC1Q8IUR5 882 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 LEO1Q8WVC0 666 aaPredicted RBP8.73□□□□□ -1.01
NEDD9-204ENST00000448183 LMBRD1Q9NUN5 540 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 SV2BQ7L1I2 683 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 CCDC65Q8IXS2 484 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 STMN2Q93045 179 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 TESK2Q96S53 571 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 PLIN2Q99541 437 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 SWAP70Q9UH65 585 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 CTNND2Q9UQB3 1225 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 SNX14Q9Y5W7 946 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 KDM2BQ8NHM5 1336 aa8.73□□□□□ -1.01
NEDD9-204ENST00000448183 SLC27A2O14975 620 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 IFT20Q8IY31 132 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 GPR161Q8N6U8 529 aaKnown RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 TMEM87BQ96K49 555 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 NLRP3Q96P20 1036 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 MPHOSPH6Q99547 160 aaKnown RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 DDX23Q9BUQ8 820 aaKnown RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 MCM9Q9NXL9 1143 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 AOX1Q06278 1338 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 SGSM2O43147 1006 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 CUTAO60888 179 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 ZNF174Q15697 407 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 UTP14CQ5TAP6 766 aaKnown RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 RUFY4Q6ZNE9 571 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 MAGEB6Q8N7X4 407 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 MSANTD4Q8NCY6 345 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 EIF4G3O43432 1585 aaKnown RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 DEXIO95424 95 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 ARL1P40616 181 aaPredicted RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 ARHGAP25P42331 645 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 ATP11AP98196 1134 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 CROCCP2Q86T23 111 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 ZCRB1Q8TBF4 217 aaKnown RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 OTUD7AQ8TE49 926 aaPredicted RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 PHACTR3Q96KR7 559 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 ZNF219Q9P2Y4 722 aaPredicted RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 MSH6P52701 1360 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 CFAP43Q8NDM7 1665 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 GOLGA6BA6NDN3 693 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 PLCG2P16885 1265 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 PSMC4P43686 418 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 CHRNA2Q15822 529 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 INF2Q27J81 1249 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 DCAF17Q5H9S7 520 aaPredicted RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 MIGA1Q8NAN2 632 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 NUP58Q9BVL2 599 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 CSRNP2Q9H175 543 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 NFE2L3Q9Y4A8 694 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 FLT4P35916 1363 aa8.72□□□□□ -1.01
NEDD9-204ENST00000448183 DENND4BO75064 1496 aaPredicted RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 TCOF1Q13428 1488 aaKnown RBP8.72□□□□□ -1.01
NEDD9-204ENST00000448183 NDC80O14777 642 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 NOL3O60936 208 aaKnown RBP8.71□□□□□ -1.01
NEDD9-204ENST00000448183 ADAMTS2O95450 1211 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 NLRP12P59046 1061 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 PDE4DQ08499 809 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 PPFIA1Q13136 1202 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 CEP128Q6ZU80 1094 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 SYNRGQ9UMZ2 1314 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 PPIP5K1Q6PFW1 1433 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 ZNF202O95125 648 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 KRT9P35527 623 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 LMNTD2Q8IXW0 634 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 CSGALNACT2Q8N6G5 542 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 SECISBP2LQ93073 1101 aaKnown RBP8.71□□□□□ -1.01
NEDD9-204ENST00000448183 CABS1Q96KC9 395 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 NOX5Q96PH1 765 aa8.71□□□□□ -1.01
NEDD9-204ENST00000448183 NAP1L4Q99733 375 aaKnown RBP8.71□□□□□ -1.01
NEDD9-204ENST00000448183 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.71□□□□□ -1.01
NEDD9-204ENST00000448183 OAS2P29728 719 aaKnown RBP8.71□□□□□ -1.02
NEDD9-204ENST00000448183 CNNM4Q6P4Q7 775 aa8.71□□□□□ -1.02
NEDD9-204ENST00000448183 CACNA2D3Q8IZS8 1091 aa8.71□□□□□ -1.02
NEDD9-204ENST00000448183 BICC1Q9H694 974 aaKnown RBP8.71□□□□□ -1.02
NEDD9-204ENST00000448183 MKRN1Q9UHC7 482 aaKnown RBP8.71□□□□□ -1.02
NEDD9-204ENST00000448183 HDAC9Q9UKV0 1011 aa8.71□□□□□ -1.02
NEDD9-204ENST00000448183 KIAA0556O60303 1618 aa8.71□□□□□ -1.02
NEDD9-204ENST00000448183 POLR2DO15514 142 aaKnown RBP8.71□□□□□ -1.02
NEDD9-204ENST00000448183 SPOPO43791 374 aa8.71□□□□□ -1.02
NEDD9-204ENST00000448183 GADD45BO75293 160 aaPredicted RBP8.71□□□□□ -1.02
NEDD9-204ENST00000448183 RFC4P35249 363 aa8.71□□□□□ -1.02
NEDD9-204ENST00000448183 PCK1P35558 622 aa8.71□□□□□ -1.02
NEDD9-204ENST00000448183 CFAP157Q5JU67 520 aa8.71□□□□□ -1.02
NEDD9-204ENST00000448183 TMEM63CQ9P1W3 806 aa8.71□□□□□ -1.02
NEDD9-204ENST00000448183 MAP3K5Q99683 1374 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 CIB2O75838 187 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 PAK1Q13153 545 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 PAK2Q13177 524 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 SEPT6Q14141 434 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 TTLL12Q14166 644 aaPredicted RBP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 DIS3L2Q8IYB7 885 aaKnown RBP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 BCL2L12Q9HB09 334 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 ANGEL1Q9UNK9 670 aaKnown RBP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 FAM169AQ9Y6X4 670 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 ZFYVE9O95405 1425 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 EPB41P11171 864 aaKnown RBP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 PICALMQ13492 652 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms