RNA–Protein interactions for RNA: ENST00000437951.5

PTCH1-209, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,049 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-209ENST00000437951 LMNB2Q03252 620 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 CAPS2Q9BXY5 557 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 ABCF2Q9UG63 623 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 BAG3O95817 575 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 PHBP35232 272 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 IFIT5Q13325 482 aaKnown RBP12.86□□□□□ -0.35
PTCH1-209ENST00000437951 ZNF445P59923 1031 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 CTTNBP2NLQ9P2B4 639 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 TRIM75PA6NK02 468 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 WTAPQ15007 396 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 LIN9Q5TKA1 542 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 HELBQ8NG08 1087 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-209ENST00000437951 EPS15L1Q9UBC2 864 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 CCDC51Q96ER9 411 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 TIAM1Q13009 1591 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 DDX54Q8TDD1 881 aaKnown RBP12.86□□□□□ -0.35
PTCH1-209ENST00000437951 RBSNQ9H1K0 784 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 CAMSAP2Q08AD1 1489 aa12.86□□□□□ -0.35
PTCH1-209ENST00000437951 DYNC1I2Q13409 638 aaKnown RBP12.85□□□□□ -0.35
PTCH1-209ENST00000437951 AGTPBP1Q9UPW5 1226 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 IQUBQ8NA54 791 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 CXorf38Q8TB03 319 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 CCDC124Q96CT7 223 aaKnown RBP12.85□□□□□ -0.35
PTCH1-209ENST00000437951 FRMD4BQ9Y2L6 1034 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 EFCAB8A8MWE9 144 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 GSTO1P78417 241 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 RTN1Q16799 776 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 NLRP7Q8WX94 980 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 LDHCP07864 332 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 KLHDC4Q8TBB5 520 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 USP6NLQ92738 828 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 RUNDC3BQ96NL0 473 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 CCDC93Q567U6 631 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 CCHCR1Q8TD31 782 aa12.85□□□□□ -0.35
PTCH1-209ENST00000437951 KRT2P35908 639 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 PEX19P40855 299 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 ARHGAP4P98171 946 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 GFM2Q969S9 779 aaKnown RBP12.84□□□□□ -0.35
PTCH1-209ENST00000437951 PTPRGP23470 1445 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 RGS16O15492 202 aaPredicted RBP12.84□□□□□ -0.35
PTCH1-209ENST00000437951 MCM7P33993 719 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 UAP1Q16222 522 aaPredicted RBP12.84□□□□□ -0.35
PTCH1-209ENST00000437951 IGSF22Q8N9C0 903 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 ARHGAP45Q92619 1136 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 EPB41P11171 864 aaKnown RBP12.84□□□□□ -0.35
PTCH1-209ENST00000437951 MICU3Q86XE3 530 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 FBXO41Q8TF61 875 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 HSPA8P11142 646 aaKnown RBP12.84□□□□□ -0.35
PTCH1-209ENST00000437951 ZNF354CQ86Y25 554 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 SSH1Q8WYL5 1049 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 STK38LQ9Y2H1 464 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 STX2P32856 288 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 DACT3Q96B18 629 aaPredicted RBP12.84□□□□□ -0.35
PTCH1-209ENST00000437951 SMARCA5O60264 1052 aaPredicted RBP12.84□□□□□ -0.35
PTCH1-209ENST00000437951 FLOT1O75955 427 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 CNNM4Q6P4Q7 775 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 ACTR5Q9H9F9 607 aaPredicted RBP12.84□□□□□ -0.35
PTCH1-209ENST00000437951 ANKIB1Q9P2G1 1089 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 SAMM50Q9Y512 469 aa12.84□□□□□ -0.35
PTCH1-209ENST00000437951 CREB3O43889 395 aa12.83□□□□□ -0.35
PTCH1-209ENST00000437951 PHEXP78562 749 aa12.83□□□□□ -0.35
PTCH1-209ENST00000437951 SEPT2Q15019 361 aa12.83□□□□□ -0.35
PTCH1-209ENST00000437951 RALGAPBQ86X10 1494 aa12.83□□□□□ -0.35
PTCH1-209ENST00000437951 MAN1A2O60476 641 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 DNM1Q05193 864 aaKnown RBP12.83□□□□□ -0.36
PTCH1-209ENST00000437951 NBPF6Q5VWK0 638 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 NBPF4Q96M43 638 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 RILPQ96NA2 401 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 ZNF500O60304 480 aaPredicted RBP12.83□□□□□ -0.36
PTCH1-209ENST00000437951 IGSF3O75054 1194 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 ESR2Q92731 530 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 TYW1Q9NV66 732 aaKnown RBP12.83□□□□□ -0.36
PTCH1-209ENST00000437951 NSD3Q9BZ95 1437 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 ZNF75DP51815 510 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 NCBP1Q09161 790 aaKnown RBP12.83□□□□□ -0.36
PTCH1-209ENST00000437951 GRK7Q8WTQ7 553 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.83□□□□□ -0.36
PTCH1-209ENST00000437951 SPOPO43791 374 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 PSMD6Q15008 389 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 LEO1Q8WVC0 666 aaPredicted RBP12.83□□□□□ -0.36
PTCH1-209ENST00000437951 ZKSCAN3Q9BRR0 538 aa12.83□□□□□ -0.36
PTCH1-209ENST00000437951 SKIP12755 728 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 SLC9C1Q4G0N8 1177 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 SUN1O94901 812 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 LMNAP02545 664 aaKnown RBP12.82□□□□□ -0.36
PTCH1-209ENST00000437951 ORC6Q9Y5N6 252 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 A0A087WUV0 522 aaPredicted RBP12.82□□□□□ -0.36
PTCH1-209ENST00000437951 ARHGAP42A6NI28 874 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 UQCRFS1P1P0C7P4 283 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 DIXDC1Q155Q3 683 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 IFIT1BQ5T764 474 aaKnown RBP12.82□□□□□ -0.36
PTCH1-209ENST00000437951 HAUS1Q96CS2 278 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 DTNBP1Q96EV8 351 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 C6orf50Q9HD87 102 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 HLA-DOAP06340 250 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 PIK3R4Q99570 1358 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 ZFXP17010 805 aaPredicted RBP12.82□□□□□ -0.36
PTCH1-209ENST00000437951 PLCD1P51178 756 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 CUL4BQ13620 913 aa12.82□□□□□ -0.36
PTCH1-209ENST00000437951 CARD6Q9BX69 1037 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms