RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 ZNF396Q96N95 335 aaPredicted RBP18.08■□□□□ 0.48
SCARF1-203ENST00000434376 STRBPQ96SI9 672 aaKnown RBP18.08■□□□□ 0.48
SCARF1-203ENST00000434376 TSGA10IPQ3SY00 556 aa18.08■□□□□ 0.48
SCARF1-203ENST00000434376 MEX3CQ5U5Q3 659 aaKnown RBP18.08■□□□□ 0.48
SCARF1-203ENST00000434376 TBC1D9BQ66K14 1250 aa18.08■□□□□ 0.48
SCARF1-203ENST00000434376 ZSCAN25Q6NSZ9 544 aa18.08■□□□□ 0.48
SCARF1-203ENST00000434376 MB21D2Q8IYB1 491 aaPredicted RBP18.08■□□□□ 0.48
SCARF1-203ENST00000434376 HPS5Q9UPZ3 1129 aa18.08■□□□□ 0.48
SCARF1-203ENST00000434376 NMT2O60551 498 aa18.07■□□□□ 0.48
SCARF1-203ENST00000434376 SMC2O95347 1197 aa18.07■□□□□ 0.48
SCARF1-203ENST00000434376 ILDR1Q86SU0 546 aaPredicted RBP18.07■□□□□ 0.48
SCARF1-203ENST00000434376 ANKIB1Q9P2G1 1089 aa18.07■□□□□ 0.48
SCARF1-203ENST00000434376 LETM1O95202 739 aaPredicted RBP18.07■□□□□ 0.48
SCARF1-203ENST00000434376 TRIM28Q13263 835 aaKnown RBP18.07■□□□□ 0.48
SCARF1-203ENST00000434376 CPLX2Q6PUV4 134 aaKnown RBP18.07■□□□□ 0.48
SCARF1-203ENST00000434376 LINC00116Q8NCU8 138 aa18.07■□□□□ 0.48
SCARF1-203ENST00000434376 UBAC1Q9BSL1 405 aa18.07■□□□□ 0.48
SCARF1-203ENST00000434376 KIF1AQ12756 1690 aa18.06■□□□□ 0.48
SCARF1-203ENST00000434376 ERICH2A1L162 156 aa18.06■□□□□ 0.48
SCARF1-203ENST00000434376 AMIGO3Q86WK7 504 aa18.06■□□□□ 0.48
SCARF1-203ENST00000434376 BTBD18B2RXH4 712 aa18.06■□□□□ 0.48
SCARF1-203ENST00000434376 ZPR1O75312 459 aa18.06■□□□□ 0.48
SCARF1-203ENST00000434376 CAMTA2O94983 1202 aa18.06■□□□□ 0.48
SCARF1-203ENST00000434376 NR5A1Q13285 461 aa18.06■□□□□ 0.48
SCARF1-203ENST00000434376 KRT40Q6A162 431 aa18.06■□□□□ 0.48
SCARF1-203ENST00000434376 APOA5Q6Q788 366 aa18.06■□□□□ 0.48
SCARF1-203ENST00000434376 ZNF34Q8IZ26 560 aa18.06■□□□□ 0.48
SCARF1-203ENST00000434376 CLSTN2Q9H4D0 955 aa18.06■□□□□ 0.48
SCARF1-203ENST00000434376 ZSCAN16Q9H4T2 348 aaPredicted RBP18.06■□□□□ 0.48
SCARF1-203ENST00000434376 DHX16O60231 1041 aaKnown RBP18.06■□□□□ 0.48
SCARF1-203ENST00000434376 DDX19AQ9NUU7 478 aaKnown RBP18.06■□□□□ 0.48
SCARF1-203ENST00000434376 ZNF219Q9P2Y4 722 aaPredicted RBP18.06■□□□□ 0.48
SCARF1-203ENST00000434376 SPTLC2O15270 562 aa18.05■□□□□ 0.48
SCARF1-203ENST00000434376 RAD21O60216 631 aa18.05■□□□□ 0.48
SCARF1-203ENST00000434376 COBLO75128 1261 aa18.05■□□□□ 0.48
SCARF1-203ENST00000434376 STAMQ92783 540 aa18.05■□□□□ 0.48
SCARF1-203ENST00000434376 TACC3Q9Y6A5 838 aa18.05■□□□□ 0.48
SCARF1-203ENST00000434376 ZSCAN20P17040 1043 aaPredicted RBP18.05■□□□□ 0.48
SCARF1-203ENST00000434376 LMOD1P29536 600 aaPredicted RBP18.05■□□□□ 0.48
SCARF1-203ENST00000434376 TTF1Q15361 905 aaPredicted RBP18.05■□□□□ 0.48
SCARF1-203ENST00000434376 ZBTB9Q96C00 473 aa18.05■□□□□ 0.48
SCARF1-203ENST00000434376 IL17RAQ96F46 866 aa18.05■□□□□ 0.48
SCARF1-203ENST00000434376 CLIP2Q9UDT6 1046 aa18.05■□□□□ 0.48
SCARF1-203ENST00000434376 BCL9O00512 1426 aa18.05■□□□□ 0.48
SCARF1-203ENST00000434376 TXNRD3Q86VQ6 643 aa18.05■□□□□ 0.48
SCARF1-203ENST00000434376 SMARCC2Q8TAQ2 1214 aa18.05■□□□□ 0.48
SCARF1-203ENST00000434376 PHRF1Q9P1Y6 1649 aaKnown RBP18.04■□□□□ 0.48
SCARF1-203ENST00000434376 VGLL2Q8N8G2 317 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 FBXO18Q8NFZ0 1043 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 KCPQ6ZWJ8 1503 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 UQCRFS1P1P0C7P4 283 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 CYP2D6P10635 497 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 PRDX5P30044 214 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 DMTNQ08495 405 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 MAPK8IP2Q13387 824 aaPredicted RBP18.04■□□□□ 0.48
SCARF1-203ENST00000434376 NAA30Q147X3 362 aaPredicted RBP18.04■□□□□ 0.48
SCARF1-203ENST00000434376 ZNF827Q17R98 1081 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 MYSM1Q5VVJ2 828 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 SETDB2Q96T68 719 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 NACAP1Q9BZK3 213 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.04■□□□□ 0.48
SCARF1-203ENST00000434376 V9GYY5 206 aaPredicted RBP18.04■□□□□ 0.48
SCARF1-203ENST00000434376 RIC1Q4ADV7 1423 aa18.04■□□□□ 0.48
SCARF1-203ENST00000434376 GOLGA6L6A8MZA4 724 aa18.03■□□□□ 0.48
SCARF1-203ENST00000434376 WTAPQ15007 396 aa18.03■□□□□ 0.48
SCARF1-203ENST00000434376 ZNF274Q96GC6 653 aaPredicted RBP18.03■□□□□ 0.48
SCARF1-203ENST00000434376 SPATA31A1Q5TZJ5 1347 aa18.03■□□□□ 0.48
SCARF1-203ENST00000434376 FAM205CA6NFA0 338 aa18.03■□□□□ 0.48
SCARF1-203ENST00000434376 GSG1L2A8MUP6 293 aa18.03■□□□□ 0.48
SCARF1-203ENST00000434376 F8W031 263 aaPredicted RBP18.03■□□□□ 0.48
SCARF1-203ENST00000434376 GOLGA8FQ08AF8 430 aa18.03■□□□□ 0.48
SCARF1-203ENST00000434376 GOLGA8DPQ0D2H9 430 aa18.03■□□□□ 0.48
SCARF1-203ENST00000434376 GRAMD1CQ8IYS0 662 aa18.03■□□□□ 0.48
SCARF1-203ENST00000434376 CAVIN4Q5BKX8 364 aa18.03■□□□□ 0.48
SCARF1-203ENST00000434376 MRPS27Q92552 414 aaKnown RBP18.03■□□□□ 0.48
SCARF1-203ENST00000434376 TMX1Q9H3N1 280 aa18.03■□□□□ 0.48
SCARF1-203ENST00000434376 VPS54Q9P1Q0 977 aa18.03■□□□□ 0.48
SCARF1-203ENST00000434376 COL18A1P39060 1754 aa18.02■□□□□ 0.48
SCARF1-203ENST00000434376 USP17L12C9JPN9 530 aa18.02■□□□□ 0.48
SCARF1-203ENST00000434376 USP17L21D6R901 530 aa18.02■□□□□ 0.48
SCARF1-203ENST00000434376 AKAP17AQ02040 695 aaKnown RBP18.02■□□□□ 0.48
SCARF1-203ENST00000434376 DPCR1Q3MIW9 517 aa18.02■□□□□ 0.48
SCARF1-203ENST00000434376 NAA16Q6N069 864 aaPredicted RBP18.02■□□□□ 0.48
SCARF1-203ENST00000434376 FUCA2Q9BTY2 467 aa18.02■□□□□ 0.48
SCARF1-203ENST00000434376 CCNL1Q9UK58 526 aaPredicted RBP18.02■□□□□ 0.48
SCARF1-203ENST00000434376 CDC5LQ99459 802 aaKnown RBP18.02■□□□□ 0.48
SCARF1-203ENST00000434376 MAGEB6P1A0A0J9YX57 407 aa18.01■□□□□ 0.47
SCARF1-203ENST00000434376 UVSSAQ2YD98 709 aa18.01■□□□□ 0.47
SCARF1-203ENST00000434376 UIMC1Q96RL1 719 aa18.01■□□□□ 0.47
SCARF1-203ENST00000434376 FOXN1O15353 648 aa18.01■□□□□ 0.47
SCARF1-203ENST00000434376 CASP1P29466 404 aa18.01■□□□□ 0.47
SCARF1-203ENST00000434376 GRIN1Q05586 938 aa18.01■□□□□ 0.47
SCARF1-203ENST00000434376 SAP30BPQ9UHR5 308 aaKnown RBP18.01■□□□□ 0.47
SCARF1-203ENST00000434376 ZNF652Q9Y2D9 606 aa18.01■□□□□ 0.47
SCARF1-203ENST00000434376 ARFGEF2Q9Y6D5 1785 aa18.01■□□□□ 0.47
SCARF1-203ENST00000434376 PATL2C9JE40 543 aaKnown RBP18.01■□□□□ 0.47
SCARF1-203ENST00000434376 DIXDC1Q155Q3 683 aa18.01■□□□□ 0.47
SCARF1-203ENST00000434376 KLHL10Q6JEL2 608 aa18.01■□□□□ 0.47
SCARF1-203ENST00000434376 CPVLQ9H3G5 476 aa18.01■□□□□ 0.47
SCARF1-203ENST00000434376 KCNF1Q9H3M0 494 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms