RNA–Protein interactions for RNA: ENST00000430771.2

CHD4-202, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 527 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-202ENST00000430771 PNMA8AQ86V59 439 aaPredicted RBP13.24□□□□□ -0.29
CHD4-202ENST00000430771 AATFQ9NY61 560 aaKnown RBP eCLIP13.24□□□□□ -0.29
CHD4-202ENST00000430771 DDX60LQ5H9U9 1706 aaKnown RBP13.24□□□□□ -0.29
CHD4-202ENST00000430771 LAMB1P07942 1786 aa13.23□□□□□ -0.29
CHD4-202ENST00000430771 A0A0D9SFI3 127 aa13.23□□□□□ -0.29
CHD4-202ENST00000430771 WNT10BO00744 389 aa13.23□□□□□ -0.29
CHD4-202ENST00000430771 MBD4O95243 580 aa13.23□□□□□ -0.29
CHD4-202ENST00000430771 VEGFAP15692 232 aaPredicted RBP13.23□□□□□ -0.29
CHD4-202ENST00000430771 SAMD7Q7Z3H4 446 aa13.23□□□□□ -0.29
CHD4-202ENST00000430771 MIGA1Q8NAN2 632 aa13.23□□□□□ -0.29
CHD4-202ENST00000430771 TRPM4Q8TD43 1214 aa13.23□□□□□ -0.29
CHD4-202ENST00000430771 ZNF526Q8TF50 670 aaPredicted RBP13.23□□□□□ -0.29
CHD4-202ENST00000430771 ZBED3Q96IU2 234 aaPredicted RBP13.23□□□□□ -0.29
CHD4-202ENST00000430771 TAF1DQ9H5J8 278 aaPredicted RBP13.23□□□□□ -0.29
CHD4-202ENST00000430771 CCDC171Q6TFL3 1326 aa13.22□□□□□ -0.29
CHD4-202ENST00000430771 M0R2C6 588 aa13.22□□□□□ -0.29
CHD4-202ENST00000430771 GPAA1O43292 621 aa13.22□□□□□ -0.29
CHD4-202ENST00000430771 GNAT2P19087 354 aa13.22□□□□□ -0.29
CHD4-202ENST00000430771 YY1P25490 414 aa13.22□□□□□ -0.29
CHD4-202ENST00000430771 CHMLP26374 656 aa13.22□□□□□ -0.29
CHD4-202ENST00000430771 PPP4CP60510 307 aa13.22□□□□□ -0.29
CHD4-202ENST00000430771 TNFAIP1Q13829 316 aa13.22□□□□□ -0.29
CHD4-202ENST00000430771 SPDYE2Q495Y8 402 aa13.22□□□□□ -0.29
CHD4-202ENST00000430771 MCMDC2Q4G0Z9 681 aa13.22□□□□□ -0.29
CHD4-202ENST00000430771 RBM26Q5T8P6 1007 aaKnown RBP13.22□□□□□ -0.29
CHD4-202ENST00000430771 APOBEC3HQ6NTF7 200 aaKnown RBP13.22□□□□□ -0.29
CHD4-202ENST00000430771 CWC27Q6UX04 472 aaKnown RBP13.22□□□□□ -0.29
CHD4-202ENST00000430771 APOBEC3FQ8IUX4 373 aaKnown RBP13.22□□□□□ -0.29
CHD4-202ENST00000430771 OSBP2Q969R2 916 aa13.22□□□□□ -0.29
CHD4-202ENST00000430771 RIOK1Q9BRS2 568 aaKnown RBP13.22□□□□□ -0.29
CHD4-202ENST00000430771 CRNKL1Q9BZJ0 848 aaKnown RBP13.22□□□□□ -0.29
CHD4-202ENST00000430771 PUS7LQ9H0K6 701 aaKnown RBP13.22□□□□□ -0.29
CHD4-202ENST00000430771 GPBP1L1Q9HC44 474 aaPredicted RBP13.22□□□□□ -0.29
CHD4-202ENST00000430771 PITPNM2Q9BZ72 1349 aa13.21□□□□□ -0.29
CHD4-202ENST00000430771 EIF5BO60841 1220 aaKnown RBP13.21□□□□□ -0.29
CHD4-202ENST00000430771 EAPPQ56P03 285 aaPredicted RBP13.21□□□□□ -0.29
CHD4-202ENST00000430771 TEX11Q8IYF3 940 aa13.21□□□□□ -0.29
CHD4-202ENST00000430771 LCORLQ8N3X6 602 aa13.21□□□□□ -0.29
CHD4-202ENST00000430771 DDRGK1Q96HY6 314 aa13.21□□□□□ -0.29
CHD4-202ENST00000430771 FAM227BQ96M60 508 aa13.21□□□□□ -0.29
CHD4-202ENST00000430771 VEZTQ9HBM0 779 aa13.21□□□□□ -0.29
CHD4-202ENST00000430771 GGA3Q9NZ52 723 aa13.21□□□□□ -0.29
CHD4-202ENST00000430771 COL2A1P02458 1487 aaPredicted RBP13.21□□□□□ -0.3
CHD4-202ENST00000430771 RPAP1Q9BWH6 1393 aaPredicted RBP13.2□□□□□ -0.3
CHD4-202ENST00000430771 EGFRP00533 1210 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 CHGBP05060 677 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 TNNI2P48788 182 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 DYNLL1P63167 89 aaKnown RBP13.2□□□□□ -0.3
CHD4-202ENST00000430771 NBPF9Q3BBW0 867 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 SLFNL1Q499Z3 407 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 CDC42EP5Q6NZY7 148 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 ZC3H15Q8WU90 426 aaKnown RBP13.2□□□□□ -0.3
CHD4-202ENST00000430771 PRMT6Q96LA8 375 aaPredicted RBP13.2□□□□□ -0.3
CHD4-202ENST00000430771 TDRD3Q9H7E2 651 aaKnown RBP13.2□□□□□ -0.3
CHD4-202ENST00000430771 ARMT1Q9H993 441 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 RRAGCQ9HB90 399 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 NMRK2Q9NPI5 230 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 USP40Q9NVE5 1235 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 PCDHAC2Q9Y5I4 1007 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 LAMA4Q16363 1823 aa13.2□□□□□ -0.3
CHD4-202ENST00000430771 MYH1P12882 1939 aa13.19□□□□□ -0.3
CHD4-202ENST00000430771 CLRN2A0PK11 232 aa13.19□□□□□ -0.3
CHD4-202ENST00000430771 POTECB2RU33 542 aa13.19□□□□□ -0.3
CHD4-202ENST00000430771 USP5P45974 858 aa13.19□□□□□ -0.3
CHD4-202ENST00000430771 RHBDL3P58872 404 aa13.19□□□□□ -0.3
CHD4-202ENST00000430771 FKBP1CQ5VVH2 108 aa13.19□□□□□ -0.3
CHD4-202ENST00000430771 LDHDQ86WU2 507 aa13.19□□□□□ -0.3
CHD4-202ENST00000430771 SH3RF3Q8TEJ3 882 aaPredicted RBP13.19□□□□□ -0.3
CHD4-202ENST00000430771 SEC62Q99442 399 aaKnown RBP13.19□□□□□ -0.3
CHD4-202ENST00000430771 ESYT1Q9BSJ8 1104 aa13.19□□□□□ -0.3
CHD4-202ENST00000430771 IDI2Q9BXS1 227 aa13.19□□□□□ -0.3
CHD4-202ENST00000430771 ZNF70Q9UC06 446 aaPredicted RBP13.19□□□□□ -0.3
CHD4-202ENST00000430771 FLT1P17948 1338 aa13.18□□□□□ -0.3
CHD4-202ENST00000430771 SGSM2O43147 1006 aa13.18□□□□□ -0.3
CHD4-202ENST00000430771 NPM3O75607 178 aaKnown RBP13.18□□□□□ -0.3
CHD4-202ENST00000430771 ANGEL2Q5VTE6 544 aaKnown RBP13.18□□□□□ -0.3
CHD4-202ENST00000430771 CCDC129Q6ZRS4 1044 aa13.18□□□□□ -0.3
CHD4-202ENST00000430771 ZNF589Q86UQ0 364 aaPredicted RBP13.18□□□□□ -0.3
CHD4-202ENST00000430771 AMOTL1Q8IY63 956 aa13.18□□□□□ -0.3
CHD4-202ENST00000430771 DCPSQ96C86 337 aaKnown RBP13.18□□□□□ -0.3
CHD4-202ENST00000430771 STRBPQ96SI9 672 aaKnown RBP13.18□□□□□ -0.3
CHD4-202ENST00000430771 NACAP1Q9BZK3 213 aa13.18□□□□□ -0.3
CHD4-202ENST00000430771 PPP2R3BQ9Y5P8 575 aa13.18□□□□□ -0.3
CHD4-202ENST00000430771 SLC4A4Q9Y6R1 1079 aa13.18□□□□□ -0.3
CHD4-202ENST00000430771 BAZ2AQ9UIF9 1905 aaKnown RBP13.17□□□□□ -0.3
CHD4-202ENST00000430771 ZMYM6O95789 1325 aa13.17□□□□□ -0.3
CHD4-202ENST00000430771 ENTPD3O75355 529 aa13.17□□□□□ -0.3
CHD4-202ENST00000430771 WDHD1O75717 1129 aaPredicted RBP13.17□□□□□ -0.3
CHD4-202ENST00000430771 HIRAP54198 1017 aaPredicted RBP13.17□□□□□ -0.3
CHD4-202ENST00000430771 PICALMQ13492 652 aa13.17□□□□□ -0.3
CHD4-202ENST00000430771 GIMAP6Q6P9H5 292 aa13.17□□□□□ -0.3
CHD4-202ENST00000430771 KIAA1211Q6ZU35 1233 aa13.17□□□□□ -0.3
CHD4-202ENST00000430771 FAM83AQ86UY5 434 aa13.17□□□□□ -0.3
CHD4-202ENST00000430771 SULF1Q8IWU6 871 aa13.17□□□□□ -0.3
CHD4-202ENST00000430771 TGFBRAP1Q8WUH2 860 aa13.17□□□□□ -0.3
CHD4-202ENST00000430771 ATP8A2Q9NTI2 1148 aa13.17□□□□□ -0.3
CHD4-202ENST00000430771 CLEC11AQ9Y240 323 aa13.17□□□□□ -0.3
CHD4-202ENST00000430771 TCP10L2B9ZVM9 353 aa13.16□□□□□ -0.3
CHD4-202ENST00000430771 REC8O95072 547 aa13.16□□□□□ -0.3
CHD4-202ENST00000430771 TDO2P48775 406 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms