RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 KIFC2Q96AC6 838 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 SHDQ96IW2 340 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 SLC30A3Q99726 388 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 MIR1-1HGQ9H1L0 117 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 PREX1Q8TCU6 1659 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 ABCA9Q8IUA7 1624 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 TTC37Q6PGP7 1564 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 EFCAB5A4FU69 1503 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 YEATS2Q9ULM3 1422 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 SBNO2Q9Y2G9 1366 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 SIN3BO75182 1162 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 B3GALT4O96024 378 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 GHRHP01286 108 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 NME2P22392 152 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 FGFR3P22607 806 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 ETFBP38117 255 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 ZNF165P49910 485 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 HSPA2P54652 639 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 FAM160A1Q05DH4 1040 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 MAP3K11Q16584 847 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 DBN1Q16643 649 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 DDX54Q8TDD1 881 aaKnown RBP5.84□□□□□ -1.47
HMGB3-203ENST00000430118 ZNF837Q96EG3 531 aaPredicted RBP5.84□□□□□ -1.47
HMGB3-203ENST00000430118 NSUN5Q96P11 429 aaKnown RBP5.84□□□□□ -1.47
HMGB3-203ENST00000430118 EMILIN2Q9BXX0 1053 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 CCDC113Q9H0I3 377 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 ATP13A2Q9NQ11 1180 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 UBP1Q9NZI7 540 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 GPN3Q9UHW5 284 aaPredicted RBP5.84□□□□□ -1.47
HMGB3-203ENST00000430118 TLR6Q9Y2C9 796 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 MSRB2Q9Y3D2 182 aa5.84□□□□□ -1.47
HMGB3-203ENST00000430118 FAM221AA4D161 298 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 WFS1O76024 890 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 ACPPP15309 386 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 CRKP46108 304 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 GIPRP48546 466 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 FAAP100Q0VG06 881 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 RASA3Q14644 834 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 SPRED3Q2MJR0 410 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 FOXR1Q6PIV2 292 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 CCDC155Q8N6L0 562 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 RBBP8NLQ8NC74 664 aaPredicted RBP5.83□□□□□ -1.48
HMGB3-203ENST00000430118 TNFRSF25Q93038 417 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 ABHD17AQ96GS6 310 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 TRERF1Q96PN7 1200 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 DEPDC7Q96QD5 511 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 SRPK1Q96SB4 655 aaKnown RBP5.83□□□□□ -1.48
HMGB3-203ENST00000430118 SENP2Q9HC62 589 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 ABCA8O94911 1581 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 RAPGEF2Q9Y4G8 1499 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 FER1L4A9Z1Z3 1794 aa5.83□□□□□ -1.48
HMGB3-203ENST00000430118 UHRF1BP1Q6BDS2 1440 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 CILPO75339 1184 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 PTPRAP18433 802 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 CD33P20138 364 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 ITGA6P23229 1130 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 EIF6P56537 245 aaKnown RBP5.82□□□□□ -1.48
HMGB3-203ENST00000430118 ZNF468Q5VIY5 522 aaPredicted RBP5.82□□□□□ -1.48
HMGB3-203ENST00000430118 ZCRB1Q8TBF4 217 aaKnown RBP5.82□□□□□ -1.48
HMGB3-203ENST00000430118 ASAP3Q8TDY4 903 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 ADAM19Q9H013 955 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 RASSF4Q9H2L5 321 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 SNTG2Q9NY99 539 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 FRRS1LQ9P0K9 344 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 HCN2Q9UL51 889 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 ZNRF3Q9ULT6 936 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.82□□□□□ -1.48
HMGB3-203ENST00000430118 MRPL42Q9Y6G3 142 aaKnown RBP5.82□□□□□ -1.48
HMGB3-203ENST00000430118 DENND4BO75064 1496 aaPredicted RBP5.82□□□□□ -1.48
HMGB3-203ENST00000430118 CTTNBP2Q8WZ74 1663 aa5.82□□□□□ -1.48
HMGB3-203ENST00000430118 FRMPD1Q5SYB0 1578 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 ZFYVE16Q7Z3T8 1539 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 METTL12A8MUP2 240 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 F6X3S4 739 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 PAGE1O75459 146 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 BPNT1O95861 308 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 F13A1P00488 732 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 SNRPBP14678 240 aaKnown RBP5.81□□□□□ -1.48
HMGB3-203ENST00000430118 BMP6P22004 513 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 HNRNPUQ00839 825 aaKnown RBP eCLIP5.81□□□□□ -1.48
HMGB3-203ENST00000430118 PCDH1Q08174 1060 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 TCEAL1Q15170 157 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 SEZ6Q53EL9 994 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 PLEKHG4Q58EX7 1191 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 RNF187Q5TA31 235 aaPredicted RBP5.81□□□□□ -1.48
HMGB3-203ENST00000430118 ZNF662Q6ZS27 426 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 REC114Q7Z4M0 266 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 C19orf47Q8N9M1 422 aaKnown RBP5.81□□□□□ -1.48
HMGB3-203ENST00000430118 HNRNPLLQ8WVV9 542 aaKnown RBP5.81□□□□□ -1.48
HMGB3-203ENST00000430118 TTC9Q92623 222 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 ANAPC16Q96DE5 110 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 CRBNQ96SW2 442 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 DNAJB12Q9NXW2 375 aaKnown RBP5.81□□□□□ -1.48
HMGB3-203ENST00000430118 SOX13Q9UN79 622 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 PRKAB1Q9Y478 270 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 MRVI1Q9Y6F6 885 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 MAGI2Q86UL8 1455 aa5.81□□□□□ -1.48
HMGB3-203ENST00000430118 ZMYM4Q5VZL5 1548 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 FAM177BA6PVY3 158 aa5.8□□□□□ -1.48
HMGB3-203ENST00000430118 ZBTB42B2RXF5 422 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms