RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PIK3AP1Q6ZUJ8 805 aa17.29■□□□□ 0.36
PTPRF-206ENST00000429895 IQUBQ8NA54 791 aa17.29■□□□□ 0.36
PTPRF-206ENST00000429895 DAPK3O43293 454 aa17.29■□□□□ 0.36
PTPRF-206ENST00000429895 STK32BQ9NY57 414 aa17.29■□□□□ 0.36
PTPRF-206ENST00000429895 LUC7L2Q9Y383 392 aaKnown RBP17.29■□□□□ 0.36
PTPRF-206ENST00000429895 TRPC3Q13507 836 aa17.29■□□□□ 0.36
PTPRF-206ENST00000429895 PPP2R5DQ14738 602 aa17.29■□□□□ 0.36
PTPRF-206ENST00000429895 MTRF1LQ9UGC7 380 aaKnown RBP17.29■□□□□ 0.36
PTPRF-206ENST00000429895 MAP3K5Q99683 1374 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 CPA1P15085 419 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 ITGA6P23229 1130 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 INF2Q27J81 1249 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 KRT222Q8N1A0 295 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 PRIMPOLQ96LW4 560 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 TRIM7Q9C029 511 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 TRIM6Q9C030 488 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-206ENST00000429895 PCDH11XQ9BZA7 1347 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 PCDH11YQ9BZA8 1340 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 SLC8A3P57103 927 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 NOC4LQ9BVI4 516 aaKnown RBP17.28■□□□□ 0.36
PTPRF-206ENST00000429895 ARHGEF10LQ9HCE6 1279 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 MTUS1Q9ULD2 1270 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 A0A1B0GVL5 298 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 RNASE9P60153 205 aaKnown RBP17.28■□□□□ 0.36
PTPRF-206ENST00000429895 NCAPH2Q6IBW4 605 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 CEP85Q6P2H3 762 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 SPOPO43791 374 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 HIBADHP31937 336 aaKnown RBP17.28■□□□□ 0.36
PTPRF-206ENST00000429895 STRN3Q13033 797 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 CALCOCO2Q13137 446 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 CCDC121Q6ZUS5 278 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 DAAM2Q86T65 1068 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 FAM204AQ9H8W3 233 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 MAPK8IP1Q9UQF2 711 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 SMTNP53814 917 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 PDE4DQ08499 809 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 GPIHBP1Q8IV16 184 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 DCAF5Q96JK2 942 aa17.28■□□□□ 0.36
PTPRF-206ENST00000429895 RNMTO43148 476 aaKnown RBP17.27■□□□□ 0.36
PTPRF-206ENST00000429895 GABPAQ06546 454 aa17.27■□□□□ 0.36
PTPRF-206ENST00000429895 KIFAP3Q92845 792 aa17.27■□□□□ 0.36
PTPRF-206ENST00000429895 TNFAIP3P21580 790 aa17.27■□□□□ 0.36
PTPRF-206ENST00000429895 SYT10Q6XYQ8 523 aa17.27■□□□□ 0.36
PTPRF-206ENST00000429895 VPS18Q9P253 973 aa17.27■□□□□ 0.36
PTPRF-206ENST00000429895 IVNS1ABPQ9Y6Y0 642 aa17.27■□□□□ 0.36
PTPRF-206ENST00000429895 ERCC5P28715 1186 aaPredicted RBP17.27■□□□□ 0.36
PTPRF-206ENST00000429895 USH1GQ495M9 461 aa17.27■□□□□ 0.36
PTPRF-206ENST00000429895 RALGAPBQ86X10 1494 aa17.27■□□□□ 0.35
PTPRF-206ENST00000429895 FAM170AA1A519 330 aa17.27■□□□□ 0.35
PTPRF-206ENST00000429895 CPLX4Q7Z7G2 160 aa17.27■□□□□ 0.35
PTPRF-206ENST00000429895 RFX1P22670 979 aa17.27■□□□□ 0.35
PTPRF-206ENST00000429895 TXKP42681 527 aa17.27■□□□□ 0.35
PTPRF-206ENST00000429895 IFT74Q96LB3 600 aa17.27■□□□□ 0.35
PTPRF-206ENST00000429895 BRAPQ7Z569 592 aa17.26■□□□□ 0.35
PTPRF-206ENST00000429895 TIMM10P62072 90 aa17.26■□□□□ 0.35
PTPRF-206ENST00000429895 TCP10Q12799 353 aa17.26■□□□□ 0.35
PTPRF-206ENST00000429895 NAP1L3Q99457 506 aaPredicted RBP17.26■□□□□ 0.35
PTPRF-206ENST00000429895 GGA1Q9UJY5 639 aa17.26■□□□□ 0.35
PTPRF-206ENST00000429895 PPP2R5CQ13362 524 aa17.26■□□□□ 0.35
PTPRF-206ENST00000429895 NAP1L4Q99733 375 aaKnown RBP17.26■□□□□ 0.35
PTPRF-206ENST00000429895 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.26■□□□□ 0.35
PTPRF-206ENST00000429895 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.26■□□□□ 0.35
PTPRF-206ENST00000429895 DYNC1I1O14576 645 aa17.26■□□□□ 0.35
PTPRF-206ENST00000429895 PRDM1O75626 825 aa17.26■□□□□ 0.35
PTPRF-206ENST00000429895 CCDC122Q5T0U0 273 aa17.26■□□□□ 0.35
PTPRF-206ENST00000429895 CPXCR1Q8N123 301 aa17.26■□□□□ 0.35
PTPRF-206ENST00000429895 PPANQ9NQ55 473 aaKnown RBP17.26■□□□□ 0.35
PTPRF-206ENST00000429895 AATFQ9NY61 560 aaKnown RBP eCLIP17.26■□□□□ 0.35
PTPRF-206ENST00000429895 NACA2Q9H009 215 aa17.26■□□□□ 0.35
PTPRF-206ENST00000429895 VPS16Q9H269 839 aa17.26■□□□□ 0.35
PTPRF-206ENST00000429895 RIMS2Q9UQ26 1411 aa17.25■□□□□ 0.35
PTPRF-206ENST00000429895 TNNC1P63316 161 aa17.25■□□□□ 0.35
PTPRF-206ENST00000429895 ERCC3P19447 782 aa17.25■□□□□ 0.35
PTPRF-206ENST00000429895 ZNF594Q96JF6 807 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-206ENST00000429895 KDM5BQ9UGL1 1544 aa17.25■□□□□ 0.35
PTPRF-206ENST00000429895 TAF5LO75529 589 aa17.25■□□□□ 0.35
PTPRF-206ENST00000429895 PRIM1P49642 420 aaKnown RBP17.25■□□□□ 0.35
PTPRF-206ENST00000429895 BRDTQ58F21 947 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-206ENST00000429895 POLKQ9UBT6 870 aa17.25■□□□□ 0.35
PTPRF-206ENST00000429895 LMTK3Q96Q04 1460 aa17.25■□□□□ 0.35
PTPRF-206ENST00000429895 TBC1D7Q9P0N9 293 aa17.25■□□□□ 0.35
PTPRF-206ENST00000429895 A0A1B0GUL7 405 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 GMNNO75496 209 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 GCP02774 474 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 SPOUT1Q5T280 376 aaKnown RBP17.24■□□□□ 0.35
PTPRF-206ENST00000429895 TSGA10Q9BZW7 698 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.24■□□□□ 0.35
PTPRF-206ENST00000429895 LARGE2Q8N3Y3 721 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 FLT4P35916 1363 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 CAPN2P17655 700 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 MICALL1Q8N3F8 863 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 EYA1Q99502 592 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 UHRF1BP1LA0JNW5 1464 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 ARHGEF35A5YM69 484 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 CLSTN2Q9H4D0 955 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 ALDH3A1P30838 453 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 HELLSQ9NRZ9 838 aa17.24■□□□□ 0.35
PTPRF-206ENST00000429895 V9GY48 417 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-206ENST00000429895 KRT19P08727 400 aa17.23■□□□□ 0.35
PTPRF-206ENST00000429895 VAV2P52735 878 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms