RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ECM2O94769 699 aaPredicted RBP18.05■□□□□ 0.48
SDC1-204ENST00000429035 LDHBP07195 334 aaKnown RBP18.05■□□□□ 0.48
SDC1-204ENST00000429035 CT47B1P0C2W7 299 aaPredicted RBP18.05■□□□□ 0.48
SDC1-204ENST00000429035 PHKA1P46020 1223 aa18.05■□□□□ 0.48
SDC1-204ENST00000429035 ERO1BQ86YB8 467 aa18.05■□□□□ 0.48
SDC1-204ENST00000429035 ZNF341Q9BYN7 854 aa18.05■□□□□ 0.48
SDC1-204ENST00000429035 PTPN22Q9Y2R2 807 aa18.05■□□□□ 0.48
SDC1-204ENST00000429035 ADORA1P30542 326 aa18.04■□□□□ 0.48
SDC1-204ENST00000429035 PRPF38BQ5VTL8 546 aaKnown RBP18.04■□□□□ 0.48
SDC1-204ENST00000429035 FKBP1CQ5VVH2 108 aa18.04■□□□□ 0.48
SDC1-204ENST00000429035 FBXO3Q9UK99 471 aa18.04■□□□□ 0.48
SDC1-204ENST00000429035 HDAC5Q9UQL6 1122 aa18.04■□□□□ 0.48
SDC1-204ENST00000429035 KIAA0100Q14667 2235 aaKnown RBP18.04■□□□□ 0.48
SDC1-204ENST00000429035 POTEFA5A3E0 1075 aa18.03■□□□□ 0.48
SDC1-204ENST00000429035 CETPP11597 493 aa18.03■□□□□ 0.48
SDC1-204ENST00000429035 INPP5BP32019 993 aa18.03■□□□□ 0.48
SDC1-204ENST00000429035 IL15P40933 162 aaPredicted RBP18.03■□□□□ 0.48
SDC1-204ENST00000429035 SNAPC2Q13487 334 aa18.03■□□□□ 0.48
SDC1-204ENST00000429035 CDC42EP5Q6NZY7 148 aa18.03■□□□□ 0.48
SDC1-204ENST00000429035 TRMT2AQ8IZ69 625 aaKnown RBP18.03■□□□□ 0.48
SDC1-204ENST00000429035 MRIQ9BWK5 157 aa18.03■□□□□ 0.48
SDC1-204ENST00000429035 DENND2AQ9ULE3 1009 aa18.03■□□□□ 0.48
SDC1-204ENST00000429035 IRF6O14896 467 aa18.02■□□□□ 0.48
SDC1-204ENST00000429035 CAP1Q01518 475 aa18.02■□□□□ 0.48
SDC1-204ENST00000429035 NFIAQ12857 509 aa18.02■□□□□ 0.48
SDC1-204ENST00000429035 PPIL2Q13356 520 aa18.02■□□□□ 0.48
SDC1-204ENST00000429035 DZIP1Q86YF9 867 aaKnown RBP18.02■□□□□ 0.48
SDC1-204ENST00000429035 FAM151AQ8WW52 585 aa18.02■□□□□ 0.48
SDC1-204ENST00000429035 USP40Q9NVE5 1235 aa18.02■□□□□ 0.48
SDC1-204ENST00000429035 HTTP42858 3142 aa18.02■□□□□ 0.47
SDC1-204ENST00000429035 BTBD19C9JJ37 291 aa18.01■□□□□ 0.47
SDC1-204ENST00000429035 RARSP54136 660 aaKnown RBP18.01■□□□□ 0.47
SDC1-204ENST00000429035 ARHGEF6Q15052 776 aa18.01■□□□□ 0.47
SDC1-204ENST00000429035 INTS3Q68E01 1043 aaKnown RBP18.01■□□□□ 0.47
SDC1-204ENST00000429035 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.01■□□□□ 0.47
SDC1-204ENST00000429035 ABCF2Q9UG63 623 aa18.01■□□□□ 0.47
SDC1-204ENST00000429035 SEMA3EO15041 775 aa18■□□□□ 0.47
SDC1-204ENST00000429035 SRGAP3O43295 1099 aa18■□□□□ 0.47
SDC1-204ENST00000429035 MYCP01106 439 aaPredicted RBP18■□□□□ 0.47
SDC1-204ENST00000429035 KIF22Q14807 665 aa18■□□□□ 0.47
SDC1-204ENST00000429035 SLC9C1Q4G0N8 1177 aa18■□□□□ 0.47
SDC1-204ENST00000429035 CCDC102BQ68D86 513 aa18■□□□□ 0.47
SDC1-204ENST00000429035 PTCH2Q9Y6C5 1203 aa18■□□□□ 0.47
SDC1-204ENST00000429035 DOCK1Q14185 1865 aa17.99■□□□□ 0.47
SDC1-204ENST00000429035 GNAI3P08754 354 aa17.99■□□□□ 0.47
SDC1-204ENST00000429035 ZSCAN29Q8IWY8 852 aaPredicted RBP17.99■□□□□ 0.47
SDC1-204ENST00000429035 ZGPATQ8N5A5 531 aaKnown RBP17.99■□□□□ 0.47
SDC1-204ENST00000429035 COPRSQ9NQ92 184 aa17.99■□□□□ 0.47
SDC1-204ENST00000429035 CENPFP49454 3210 aa17.99■□□□□ 0.47
SDC1-204ENST00000429035 SALL1Q9NSC2 1324 aa17.98■□□□□ 0.47
SDC1-204ENST00000429035 A0A1B0GUL7 405 aa17.98■□□□□ 0.47
SDC1-204ENST00000429035 CCER2I3L3R5 266 aa17.98■□□□□ 0.47
SDC1-204ENST00000429035 PPATQ06203 517 aa17.98■□□□□ 0.47
SDC1-204ENST00000429035 RASGRF1Q13972 1273 aa17.98■□□□□ 0.47
SDC1-204ENST00000429035 FRAT1Q92837 279 aaPredicted RBP17.98■□□□□ 0.47
SDC1-204ENST00000429035 ARMC5Q96C12 935 aa17.98■□□□□ 0.47
SDC1-204ENST00000429035 ARHGAP39Q9C0H5 1083 aa17.98■□□□□ 0.47
SDC1-204ENST00000429035 FAM198AQ9UFP1 575 aa17.98■□□□□ 0.47
SDC1-204ENST00000429035 TLR2O60603 784 aa17.97■□□□□ 0.47
SDC1-204ENST00000429035 RGS3P49796 1198 aa17.97■□□□□ 0.47
SDC1-204ENST00000429035 TIMM10P62072 90 aa17.97■□□□□ 0.47
SDC1-204ENST00000429035 TFCP2Q12800 502 aa17.97■□□□□ 0.47
SDC1-204ENST00000429035 PICALMQ13492 652 aa17.97■□□□□ 0.47
SDC1-204ENST00000429035 TMEM106CQ9BVX2 250 aa17.97■□□□□ 0.47
SDC1-204ENST00000429035 CPA4Q9UI42 421 aa17.97■□□□□ 0.47
SDC1-204ENST00000429035 TNNQ9UQP3 1299 aa17.97■□□□□ 0.47
SDC1-204ENST00000429035 SLC4A8Q2Y0W8 1093 aa17.96■□□□□ 0.47
SDC1-204ENST00000429035 ZFPM1Q8IX07 1006 aa17.96■□□□□ 0.47
SDC1-204ENST00000429035 CLUAP1Q96AJ1 413 aa17.96■□□□□ 0.47
SDC1-204ENST00000429035 XAGE2Q96GT9 111 aa17.96■□□□□ 0.47
SDC1-204ENST00000429035 NEUROD6Q96NK8 337 aa17.96■□□□□ 0.47
SDC1-204ENST00000429035 ZCCHC17Q9NP64 241 aaKnown RBP17.96■□□□□ 0.47
SDC1-204ENST00000429035 AKAP2Q9Y2D5 859 aa17.96■□□□□ 0.47
SDC1-204ENST00000429035 PTPRFP10586 1907 aa17.96■□□□□ 0.47
SDC1-204ENST00000429035 MGAMO43451 1857 aa17.95■□□□□ 0.46
SDC1-204ENST00000429035 PDHXO00330 501 aa17.95■□□□□ 0.46
SDC1-204ENST00000429035 EN2P19622 333 aaPredicted RBP17.95■□□□□ 0.46
SDC1-204ENST00000429035 BTDP43251 543 aa17.95■□□□□ 0.46
SDC1-204ENST00000429035 LACTBP83111 547 aaPredicted RBP17.95■□□□□ 0.46
SDC1-204ENST00000429035 MVPQ14764 893 aaKnown RBP17.95■□□□□ 0.46
SDC1-204ENST00000429035 GORABQ5T7V8 394 aa17.95■□□□□ 0.46
SDC1-204ENST00000429035 NBPF11Q86T75 865 aa17.95■□□□□ 0.46
SDC1-204ENST00000429035 SLF2Q8IX21 1173 aa17.95■□□□□ 0.46
SDC1-204ENST00000429035 SH3TC2Q8TF17 1288 aa17.95■□□□□ 0.46
SDC1-204ENST00000429035 ZNF333Q96JL9 665 aa17.95■□□□□ 0.46
SDC1-204ENST00000429035 ATAD5Q96QE3 1844 aa17.95■□□□□ 0.46
SDC1-204ENST00000429035 TRIM27P14373 513 aa17.94■□□□□ 0.46
SDC1-204ENST00000429035 NOL9Q5SY16 702 aaKnown RBP17.94■□□□□ 0.46
SDC1-204ENST00000429035 SPTY2D1Q68D10 685 aaPredicted RBP17.94■□□□□ 0.46
SDC1-204ENST00000429035 ERICH6Q7L0X2 663 aa17.94■□□□□ 0.46
SDC1-204ENST00000429035 ARHGAP45Q92619 1136 aa17.94■□□□□ 0.46
SDC1-204ENST00000429035 PICK1Q9NRD5 415 aa17.94■□□□□ 0.46
SDC1-204ENST00000429035 ZNF112Q9UJU3 913 aa17.94■□□□□ 0.46
SDC1-204ENST00000429035 MROH7-TTC4A0A0A0MT08 1334 aa17.94■□□□□ 0.46
SDC1-204ENST00000429035 GAKO14976 1311 aa17.94■□□□□ 0.46
SDC1-204ENST00000429035 MAST2Q6P0Q8 1798 aa17.94■□□□□ 0.46
SDC1-204ENST00000429035 RFX7Q2KHR2 1363 aa17.93■□□□□ 0.46
SDC1-204ENST00000429035 IPO8O15397 1037 aaKnown RBP17.93■□□□□ 0.46
SDC1-204ENST00000429035 GNAI2P04899 355 aa17.93■□□□□ 0.46
SDC1-204ENST00000429035 ANKRD23Q86SG2 305 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms