RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 MRIQ9BWK5 157 aa10.16□□□□□ -0.78
VIM-202ENST00000421459 TMOD2Q9NZR1 351 aa10.16□□□□□ -0.78
VIM-202ENST00000421459 DAGLAQ9Y4D2 1042 aa10.16□□□□□ -0.78
VIM-202ENST00000421459 ZSWIM8A7E2V4 1837 aa10.15□□□□□ -0.78
VIM-202ENST00000421459 ADORA1P30542 326 aa10.15□□□□□ -0.78
VIM-202ENST00000421459 LACTBP83111 547 aaPredicted RBP10.15□□□□□ -0.78
VIM-202ENST00000421459 PPIL2Q13356 520 aa10.15□□□□□ -0.78
VIM-202ENST00000421459 MOGSQ13724 837 aa10.15□□□□□ -0.78
VIM-202ENST00000421459 MTFR1Q15390 333 aa10.15□□□□□ -0.78
VIM-202ENST00000421459 C17orf99Q6UX52 265 aa10.15□□□□□ -0.78
VIM-202ENST00000421459 FAM151AQ8WW52 585 aa10.15□□□□□ -0.78
VIM-202ENST00000421459 LPIN2Q92539 896 aa10.15□□□□□ -0.78
VIM-202ENST00000421459 ZNF341Q9BYN7 854 aa10.15□□□□□ -0.78
VIM-202ENST00000421459 USP40Q9NVE5 1235 aa10.15□□□□□ -0.78
VIM-202ENST00000421459 FAM198AQ9UFP1 575 aa10.15□□□□□ -0.78
VIM-202ENST00000421459 PA2G4Q9UQ80 394 aaKnown RBP10.15□□□□□ -0.78
VIM-202ENST00000421459 PTPRCP08575 1304 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 PDHXO00330 501 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 SLC5A1P13866 664 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 PHKA1P46020 1223 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 PPATQ06203 517 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 SLFN5Q08AF3 891 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 FKBP1CQ5VVH2 108 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 NBPF11Q86T75 865 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 GCC1Q96CN9 775 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 TRIM47Q96LD4 638 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.14□□□□□ -0.79
VIM-202ENST00000421459 ZNF112Q9UJU3 913 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 COLQQ9Y215 455 aaPredicted RBP10.14□□□□□ -0.79
VIM-202ENST00000421459 LAMB1P07942 1786 aa10.14□□□□□ -0.79
VIM-202ENST00000421459 ARAP2Q8WZ64 1704 aa10.13□□□□□ -0.79
VIM-202ENST00000421459 CYP2C8P10632 490 aa10.13□□□□□ -0.79
VIM-202ENST00000421459 OSBPP22059 807 aa10.13□□□□□ -0.79
VIM-202ENST00000421459 ZEB1P37275 1124 aaPredicted RBP10.13□□□□□ -0.79
VIM-202ENST00000421459 PSMC4P43686 418 aa10.13□□□□□ -0.79
VIM-202ENST00000421459 KIF22Q14807 665 aa10.13□□□□□ -0.79
VIM-202ENST00000421459 ARHGEF6Q15052 776 aa10.13□□□□□ -0.79
VIM-202ENST00000421459 DCAF15Q66K64 600 aa10.13□□□□□ -0.79
VIM-202ENST00000421459 GPAT2Q6NUI2 795 aa10.13□□□□□ -0.79
VIM-202ENST00000421459 SH3BP5LQ7L8J4 393 aa10.13□□□□□ -0.79
VIM-202ENST00000421459 WDR66Q8TBY9 1149 aa10.13□□□□□ -0.79
VIM-202ENST00000421459 SUGT1Q9Y2Z0 365 aa10.13□□□□□ -0.79
VIM-202ENST00000421459 MAST3O60307 1309 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 ADGRA2Q96PE1 1338 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 CACNA1FO60840 1977 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 E9PSI1 815 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 H0YGN5 161 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 FMNL1O95466 1100 aaPredicted RBP10.12□□□□□ -0.79
VIM-202ENST00000421459 LDHBP07195 334 aaKnown RBP10.12□□□□□ -0.79
VIM-202ENST00000421459 FXR1P51114 621 aaKnown RBP eCLIP10.12□□□□□ -0.79
VIM-202ENST00000421459 TIMM10P62072 90 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 ATP2B3Q16720 1220 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 ANKRD23Q86SG2 305 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 CCDC84Q86UT8 332 aaPredicted RBP10.12□□□□□ -0.79
VIM-202ENST00000421459 SHISA4Q96DD7 197 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 SMC4Q9NTJ3 1288 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 CEP126Q9P2H0 1117 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 NOB1Q9ULX3 412 aaKnown RBP10.12□□□□□ -0.79
VIM-202ENST00000421459 KCNH4Q9UQ05 1017 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 LRRFIP2Q9Y608 721 aaKnown RBP10.12□□□□□ -0.79
VIM-202ENST00000421459 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.12□□□□□ -0.79
VIM-202ENST00000421459 SZT2Q5T011 3432 aa10.12□□□□□ -0.79
VIM-202ENST00000421459 KIF16BQ96L93 1317 aa10.11□□□□□ -0.79
VIM-202ENST00000421459 PHF20L1A8MW92 1017 aa10.11□□□□□ -0.79
VIM-202ENST00000421459 WDHD1O75717 1129 aaPredicted RBP10.11□□□□□ -0.79
VIM-202ENST00000421459 RGS3P49796 1198 aa10.11□□□□□ -0.79
VIM-202ENST00000421459 HOOK2Q96ED9 719 aa10.11□□□□□ -0.79
VIM-202ENST00000421459 ZCCHC17Q9NP64 241 aaKnown RBP10.11□□□□□ -0.79
VIM-202ENST00000421459 DDX4Q9NQI0 724 aaKnown RBP10.11□□□□□ -0.79
VIM-202ENST00000421459 SRRDQ9UH36 339 aa10.11□□□□□ -0.79
VIM-202ENST00000421459 GABRQQ9UN88 632 aa10.11□□□□□ -0.79
VIM-202ENST00000421459 ZHX2Q9Y6X8 837 aa10.11□□□□□ -0.79
VIM-202ENST00000421459 RPAP1Q9BWH6 1393 aaPredicted RBP10.11□□□□□ -0.79
VIM-202ENST00000421459 DDTLA6NHG4 134 aaPredicted RBP10.1□□□□□ -0.79
VIM-202ENST00000421459 UBTFL1P0CB47 393 aaPredicted RBP10.1□□□□□ -0.79
VIM-202ENST00000421459 PRKCZQ05513 592 aa10.1□□□□□ -0.79
VIM-202ENST00000421459 NOL9Q5SY16 702 aaKnown RBP10.1□□□□□ -0.79
VIM-202ENST00000421459 CCDC102BQ68D86 513 aa10.1□□□□□ -0.79
VIM-202ENST00000421459 RAET1EQ8TD07 263 aa10.1□□□□□ -0.79
VIM-202ENST00000421459 MEIS3Q99687 375 aa10.1□□□□□ -0.79
VIM-202ENST00000421459 ATRNL1Q5VV63 1379 aa10.1□□□□□ -0.79
VIM-202ENST00000421459 MYPNQ86TC9 1320 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 FAM196BA6NMK8 535 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 CIAO1O76071 339 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 BCRP11274 1271 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 CCL5P13501 91 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 PTPRAP18433 802 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 GRK4P32298 578 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 PICALMQ13492 652 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 RASGRF1Q13972 1273 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 ALDH1L2Q3SY69 923 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 CHRDL2Q6WN34 429 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 GADL1Q6ZQY3 521 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 ZSCAN29Q8IWY8 852 aaPredicted RBP10.09□□□□□ -0.79
VIM-202ENST00000421459 ZNF384Q8TF68 577 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 GNL3LQ9NVN8 582 aaKnown RBP10.09□□□□□ -0.79
VIM-202ENST00000421459 BIN2Q9UBW5 565 aaPredicted RBP10.09□□□□□ -0.79
VIM-202ENST00000421459 ABCF2Q9UG63 623 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 DENND2AQ9ULE3 1009 aa10.09□□□□□ -0.79
VIM-202ENST00000421459 TNNQ9UQP3 1299 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms