RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 HDLBPQ00341 1268 aaKnown RBP16.19■□□□□ 0.18
LINC00339-202ENST00000416769 MOGSQ13724 837 aa16.19■□□□□ 0.18
LINC00339-202ENST00000416769 MTFR1Q15390 333 aa16.19■□□□□ 0.18
LINC00339-202ENST00000416769 SLC4A8Q2Y0W8 1093 aa16.19■□□□□ 0.18
LINC00339-202ENST00000416769 CAVIN4Q5BKX8 364 aa16.19■□□□□ 0.18
LINC00339-202ENST00000416769 TBC1D22AQ8WUA7 517 aa16.19■□□□□ 0.18
LINC00339-202ENST00000416769 SHISA4Q96DD7 197 aa16.19■□□□□ 0.18
LINC00339-202ENST00000416769 TMEM106CQ9BVX2 250 aa16.19■□□□□ 0.18
LINC00339-202ENST00000416769 COLQQ9Y215 455 aaPredicted RBP16.19■□□□□ 0.18
LINC00339-202ENST00000416769 DAGLAQ9Y4D2 1042 aa16.19■□□□□ 0.18
LINC00339-202ENST00000416769 CETPP11597 493 aa16.18■□□□□ 0.18
LINC00339-202ENST00000416769 PRDX5P30044 214 aa16.18■□□□□ 0.18
LINC00339-202ENST00000416769 HNRNPUQ00839 825 aaKnown RBP eCLIP16.18■□□□□ 0.18
LINC00339-202ENST00000416769 PPIL2Q13356 520 aa16.18■□□□□ 0.18
LINC00339-202ENST00000416769 SNAPC2Q13487 334 aa16.18■□□□□ 0.18
LINC00339-202ENST00000416769 CDC42EP5Q6NZY7 148 aa16.18■□□□□ 0.18
LINC00339-202ENST00000416769 ATG9AQ7Z3C6 839 aa16.18■□□□□ 0.18
LINC00339-202ENST00000416769 FAM83AQ86UY5 434 aa16.18■□□□□ 0.18
LINC00339-202ENST00000416769 GCC1Q96CN9 775 aa16.18■□□□□ 0.18
LINC00339-202ENST00000416769 ADGRA2Q96PE1 1338 aa16.18■□□□□ 0.18
LINC00339-202ENST00000416769 H0YGN5 161 aa16.17■□□□□ 0.18
LINC00339-202ENST00000416769 MAPK8IP2Q13387 824 aaPredicted RBP16.17■□□□□ 0.18
LINC00339-202ENST00000416769 PUM3Q15397 648 aaKnown RBP16.17■□□□□ 0.18
LINC00339-202ENST00000416769 C17orf99Q6UX52 265 aa16.17■□□□□ 0.18
LINC00339-202ENST00000416769 TRIM47Q96LD4 638 aa16.17■□□□□ 0.18
LINC00339-202ENST00000416769 SIL1Q9H173 461 aa16.17■□□□□ 0.18
LINC00339-202ENST00000416769 TMOD2Q9NZR1 351 aa16.17■□□□□ 0.18
LINC00339-202ENST00000416769 FAM198AQ9UFP1 575 aa16.17■□□□□ 0.18
LINC00339-202ENST00000416769 RPAP1Q9BWH6 1393 aaPredicted RBP16.16■□□□□ 0.18
LINC00339-202ENST00000416769 EYA2O00167 538 aa16.16■□□□□ 0.18
LINC00339-202ENST00000416769 HHIPL2Q6UWX4 724 aa16.16■□□□□ 0.18
LINC00339-202ENST00000416769 ZNF341Q9BYN7 854 aa16.16■□□□□ 0.18
LINC00339-202ENST00000416769 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.16■□□□□ 0.18
LINC00339-202ENST00000416769 PDHXO00330 501 aa16.15■□□□□ 0.18
LINC00339-202ENST00000416769 IFIT1P09914 478 aaKnown RBP16.15■□□□□ 0.18
LINC00339-202ENST00000416769 FKBP1CQ5VVH2 108 aa16.15■□□□□ 0.18
LINC00339-202ENST00000416769 SZT2Q5T011 3432 aa16.14■□□□□ 0.17
LINC00339-202ENST00000416769 CYP2C8P10632 490 aa16.14■□□□□ 0.17
LINC00339-202ENST00000416769 OSBPP22059 807 aa16.14■□□□□ 0.17
LINC00339-202ENST00000416769 ADORA1P30542 326 aa16.14■□□□□ 0.17
LINC00339-202ENST00000416769 PSMC4P43686 418 aa16.14■□□□□ 0.17
LINC00339-202ENST00000416769 FAM151AQ8WW52 585 aa16.14■□□□□ 0.17
LINC00339-202ENST00000416769 CDCA7LQ96GN5 454 aa16.14■□□□□ 0.17
LINC00339-202ENST00000416769 MRIQ9BWK5 157 aa16.14■□□□□ 0.17
LINC00339-202ENST00000416769 PA2G4Q9UQ80 394 aaKnown RBP16.14■□□□□ 0.17
LINC00339-202ENST00000416769 ATRNL1Q5VV63 1379 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 RANBP2P49792 3224 aaKnown RBP16.13■□□□□ 0.17
LINC00339-202ENST00000416769 SLC5A1P13866 664 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 PHKA1P46020 1223 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 PPATQ06203 517 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 DCAF15Q66K64 600 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 GPAT2Q6NUI2 795 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 SH3BP5LQ7L8J4 393 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 NBPF11Q86T75 865 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 CCDC84Q86UT8 332 aaPredicted RBP16.13■□□□□ 0.17
LINC00339-202ENST00000416769 ZNF112Q9UJU3 913 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 KCNH4Q9UQ05 1017 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 MAST3O60307 1309 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 KIF16BQ96L93 1317 aa16.13■□□□□ 0.17
LINC00339-202ENST00000416769 DOCK2Q92608 1830 aa16.12■□□□□ 0.17
LINC00339-202ENST00000416769 MYH2Q9UKX2 1941 aa16.12■□□□□ 0.17
LINC00339-202ENST00000416769 ANKRD23Q86SG2 305 aa16.12■□□□□ 0.17
LINC00339-202ENST00000416769 LPIN2Q92539 896 aa16.12■□□□□ 0.17
LINC00339-202ENST00000416769 USP40Q9NVE5 1235 aa16.12■□□□□ 0.17
LINC00339-202ENST00000416769 SRRDQ9UH36 339 aa16.12■□□□□ 0.17
LINC00339-202ENST00000416769 SUGT1Q9Y2Z0 365 aa16.12■□□□□ 0.17
LINC00339-202ENST00000416769 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.12■□□□□ 0.17
LINC00339-202ENST00000416769 PTPRCP08575 1304 aa16.12■□□□□ 0.17
LINC00339-202ENST00000416769 MGAMO43451 1857 aa16.12■□□□□ 0.17
LINC00339-202ENST00000416769 DOCK3Q8IZD9 2030 aa16.11■□□□□ 0.17
LINC00339-202ENST00000416769 PRKCZQ05513 592 aa16.11■□□□□ 0.17
LINC00339-202ENST00000416769 KIF22Q14807 665 aa16.11■□□□□ 0.17
LINC00339-202ENST00000416769 ATP2B3Q16720 1220 aa16.11■□□□□ 0.17
LINC00339-202ENST00000416769 WDR66Q8TBY9 1149 aa16.11■□□□□ 0.17
LINC00339-202ENST00000416769 ZCCHC17Q9NP64 241 aaKnown RBP16.11■□□□□ 0.17
LINC00339-202ENST00000416769 GABRQQ9UN88 632 aa16.11■□□□□ 0.17
LINC00339-202ENST00000416769 ZBED9Q6R2W3 1325 aa16.11■□□□□ 0.17
LINC00339-202ENST00000416769 PTPRFP10586 1907 aa16.11■□□□□ 0.17
LINC00339-202ENST00000416769 RFX7Q2KHR2 1363 aa16.11■□□□□ 0.17
LINC00339-202ENST00000416769 PHF20L1A8MW92 1017 aa16.1■□□□□ 0.17
LINC00339-202ENST00000416769 FMNL1O95466 1100 aaPredicted RBP16.1■□□□□ 0.17
LINC00339-202ENST00000416769 RGS3P49796 1198 aa16.1■□□□□ 0.17
LINC00339-202ENST00000416769 ARHGEF6Q15052 776 aa16.1■□□□□ 0.17
LINC00339-202ENST00000416769 NOL9Q5SY16 702 aaKnown RBP16.1■□□□□ 0.17
LINC00339-202ENST00000416769 CHRDL2Q6WN34 429 aa16.1■□□□□ 0.17
LINC00339-202ENST00000416769 YTHDC1Q96MU7 727 aaKnown RBP16.1■□□□□ 0.17
LINC00339-202ENST00000416769 DDX4Q9NQI0 724 aaKnown RBP16.1■□□□□ 0.17
LINC00339-202ENST00000416769 MYPNQ86TC9 1320 aa16.1■□□□□ 0.17
LINC00339-202ENST00000416769 PHIPQ8WWQ0 1821 aa16.1■□□□□ 0.17
LINC00339-202ENST00000416769 BCRP11274 1271 aa16.09■□□□□ 0.17
LINC00339-202ENST00000416769 SLFN5Q08AF3 891 aa16.09■□□□□ 0.17
LINC00339-202ENST00000416769 LRRFIP2Q9Y608 721 aaKnown RBP16.09■□□□□ 0.17
LINC00339-202ENST00000416769 DDTLA6NHG4 134 aaPredicted RBP16.08■□□□□ 0.16
LINC00339-202ENST00000416769 FAM196BA6NMK8 535 aa16.08■□□□□ 0.16
LINC00339-202ENST00000416769 LDHBP07195 334 aaKnown RBP16.08■□□□□ 0.16
LINC00339-202ENST00000416769 CCL5P13501 91 aa16.08■□□□□ 0.16
LINC00339-202ENST00000416769 GRK4P32298 578 aa16.08■□□□□ 0.16
LINC00339-202ENST00000416769 UBE2Q1Q7Z7E8 422 aa16.08■□□□□ 0.16
LINC00339-202ENST00000416769 RAET1EQ8TD07 263 aa16.08■□□□□ 0.16
LINC00339-202ENST00000416769 HOOK2Q96ED9 719 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms