RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 TMEM51Q9NW97 253 aa4.56□□□□□ -1.68
SF3B1-203ENST00000414174 GABBR1Q9UBS5 961 aa4.56□□□□□ -1.68
SF3B1-203ENST00000414174 ABCF2Q9UG63 623 aa4.56□□□□□ -1.68
SF3B1-203ENST00000414174 WWC3Q9ULE0 1092 aa4.56□□□□□ -1.68
SF3B1-203ENST00000414174 GNEQ9Y223 722 aaKnown RBP4.56□□□□□ -1.68
SF3B1-203ENST00000414174 BICDL2A1A5D9 508 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 ZBTB39O15060 712 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 RARAP10276 462 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 EPB42P16452 691 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 ITGB5P18084 799 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 SSR1P43307 286 aaKnown RBP4.55□□□□□ -1.68
SF3B1-203ENST00000414174 NAA30Q147X3 362 aaPredicted RBP4.55□□□□□ -1.68
SF3B1-203ENST00000414174 LCE5AQ5TCM9 118 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 SDE2Q6IQ49 451 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 C16orf46Q6P387 395 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.55□□□□□ -1.68
SF3B1-203ENST00000414174 CREBRFQ8IUR6 639 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 TRIM42Q8IWZ5 723 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 COL26A1Q96A83 441 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 SPACA7Q96KW9 195 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 SMG9Q9H0W8 520 aaKnown RBP4.55□□□□□ -1.68
SF3B1-203ENST00000414174 SEPT3Q9UH03 358 aa4.55□□□□□ -1.68
SF3B1-203ENST00000414174 SYNRGQ9UMZ2 1314 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 DBX1A6NMT0 343 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 CBFA2T2O43439 604 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 MMP20O60882 483 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 XYLBO75191 536 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 HOXD8P13378 290 aaPredicted RBP4.54□□□□□ -1.68
SF3B1-203ENST00000414174 IBSPP21815 317 aaPredicted RBP4.54□□□□□ -1.68
SF3B1-203ENST00000414174 PEX19P40855 299 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 SF3B2Q13435 895 aaKnown RBP4.54□□□□□ -1.68
SF3B1-203ENST00000414174 ZKSCAN8Q15776 578 aaPredicted RBP4.54□□□□□ -1.68
SF3B1-203ENST00000414174 HFE2Q6ZVN8 426 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 NPAS4Q8IUM7 802 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 CLEC10AQ8IUN9 316 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 AGGF1Q8N302 714 aaeCLIP4.54□□□□□ -1.68
SF3B1-203ENST00000414174 ATL2Q8NHH9 583 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 ZCRB1Q8TBF4 217 aaKnown RBP4.54□□□□□ -1.68
SF3B1-203ENST00000414174 FAM46AQ96IP4 442 aaKnown RBP4.54□□□□□ -1.68
SF3B1-203ENST00000414174 FAM83CQ9BQN1 747 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 INO80BQ9C086 356 aaPredicted RBP4.54□□□□□ -1.68
SF3B1-203ENST00000414174 LNPKQ9C0E8 428 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 TLR7Q9NYK1 1049 aaKnown RBP4.54□□□□□ -1.68
SF3B1-203ENST00000414174 RAI14Q9P0K7 980 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 TBX22Q9Y458 520 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 SCINQ9Y6U3 715 aa4.54□□□□□ -1.68
SF3B1-203ENST00000414174 CCDC189A1A4V9 331 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 HMX2A2RU54 273 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 NRLP54845 237 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 TBX4P57082 545 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 HDLBPQ00341 1268 aaKnown RBP4.53□□□□□ -1.68
SF3B1-203ENST00000414174 BIRC2Q13490 618 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 ZRSR2Q15696 482 aaKnown RBP4.53□□□□□ -1.68
SF3B1-203ENST00000414174 COL13A1Q5TAT6 717 aaPredicted RBP4.53□□□□□ -1.68
SF3B1-203ENST00000414174 ADAMTSL4Q6UY14 1074 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 SPOCD1Q6ZMY3 1216 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 CMTR1Q8N1G2 835 aaKnown RBP4.53□□□□□ -1.68
SF3B1-203ENST00000414174 IL22RA1Q8N6P7 574 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 RPS6KC1Q96S38 1066 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 BCL2L13Q9BXK5 485 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 MUC3BQ9H195 1237 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 RSPH9Q9H1X1 276 aaPredicted RBP4.53□□□□□ -1.68
SF3B1-203ENST00000414174 YY1AP1Q9H869 796 aa4.53□□□□□ -1.68
SF3B1-203ENST00000414174 MAP3K20Q9NYL2 800 aaKnown RBP4.53□□□□□ -1.68
SF3B1-203ENST00000414174 TMEM88BA6NKF7 163 aa4.52□□□□□ -1.69
SF3B1-203ENST00000414174 KRTAP9-7A8MTY7 169 aa4.52□□□□□ -1.69
SF3B1-203ENST00000414174 J3QW42 95 aa4.52□□□□□ -1.69
SF3B1-203ENST00000414174 MAN1A1P33908 653 aa4.52□□□□□ -1.69
SF3B1-203ENST00000414174 EVA1CP58658 441 aa4.52□□□□□ -1.69
SF3B1-203ENST00000414174 MAP2K1Q02750 393 aaPredicted RBP4.52□□□□□ -1.69
SF3B1-203ENST00000414174 NEXNQ0ZGT2 675 aa4.52□□□□□ -1.69
SF3B1-203ENST00000414174 PLEKHG6Q3KR16 790 aa4.52□□□□□ -1.69
SF3B1-203ENST00000414174 GJC2Q5T442 439 aaPredicted RBP4.52□□□□□ -1.69
SF3B1-203ENST00000414174 TAF3Q5VWG9 929 aa4.52□□□□□ -1.69
SF3B1-203ENST00000414174 C1orf131Q8NDD1 294 aaKnown RBP4.52□□□□□ -1.69
SF3B1-203ENST00000414174 SHKBP1Q8TBC3 707 aa4.52□□□□□ -1.69
SF3B1-203ENST00000414174 UTP4Q969X6 686 aaKnown RBP4.52□□□□□ -1.69
SF3B1-203ENST00000414174 MYRFLQ96LU7 910 aa4.52□□□□□ -1.69
SF3B1-203ENST00000414174 NSUN5Q96P11 429 aaKnown RBP4.52□□□□□ -1.69
SF3B1-203ENST00000414174 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.52□□□□□ -1.69
SF3B1-203ENST00000414174 CARNS1A5YM72 827 aa4.51□□□□□ -1.69
SF3B1-203ENST00000414174 PRNPP04156 253 aa4.51□□□□□ -1.69
SF3B1-203ENST00000414174 ATP2B4P23634 1241 aa4.51□□□□□ -1.69
SF3B1-203ENST00000414174 ZAP70P43403 619 aa4.51□□□□□ -1.69
SF3B1-203ENST00000414174 CDC37Q16543 378 aaPredicted RBP4.51□□□□□ -1.69
SF3B1-203ENST00000414174 NOM1Q5C9Z4 860 aaKnown RBP4.51□□□□□ -1.69
SF3B1-203ENST00000414174 EFCAB2Q5VUJ9 269 aa4.51□□□□□ -1.69
SF3B1-203ENST00000414174 RPAINQ86UA6 219 aa4.51□□□□□ -1.69
SF3B1-203ENST00000414174 ZNF513Q8N8E2 541 aaPredicted RBP4.51□□□□□ -1.69
SF3B1-203ENST00000414174 FBXL18Q96ME1 805 aa4.51□□□□□ -1.69
SF3B1-203ENST00000414174 PAGR1Q9BTK6 254 aa4.51□□□□□ -1.69
SF3B1-203ENST00000414174 TMX4Q9H1E5 349 aaPredicted RBP4.51□□□□□ -1.69
SF3B1-203ENST00000414174 LOC102724428A0A0B4J2F2 783 aa4.5□□□□□ -1.69
SF3B1-203ENST00000414174 RECKO95980 971 aa4.5□□□□□ -1.69
SF3B1-203ENST00000414174 EIF2AK2P19525 551 aaKnown RBP4.5□□□□□ -1.69
SF3B1-203ENST00000414174 SOX18P35713 384 aa4.5□□□□□ -1.69
SF3B1-203ENST00000414174 SIK1P57059 783 aa4.5□□□□□ -1.69
SF3B1-203ENST00000414174 PSMC1P62191 440 aaKnown RBP4.5□□□□□ -1.69
SF3B1-203ENST00000414174 LMOD3Q0VAK6 560 aa4.5□□□□□ -1.69
SF3B1-203ENST00000414174 KRTAP19-4Q3LI73 84 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms