RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 TNFAIP1Q13829 316 aa19.55■□□□□ 0.72
PHRF1-202ENST00000413872 LRRC45Q96CN5 670 aa19.55■□□□□ 0.72
PHRF1-202ENST00000413872 GPCPD1Q9NPB8 672 aa19.55■□□□□ 0.72
PHRF1-202ENST00000413872 PNMA6EA0A0J9YXQ4 647 aa19.54■□□□□ 0.72
PHRF1-202ENST00000413872 PRPF4BQ13523 1007 aaKnown RBP19.54■□□□□ 0.72
PHRF1-202ENST00000413872 KDM5CP41229 1560 aa19.54■□□□□ 0.72
PHRF1-202ENST00000413872 RXRAP19793 462 aa19.54■□□□□ 0.72
PHRF1-202ENST00000413872 SV2BQ7L1I2 683 aa19.54■□□□□ 0.72
PHRF1-202ENST00000413872 MSANTD4Q8NCY6 345 aa19.54■□□□□ 0.72
PHRF1-202ENST00000413872 DSCC1Q9BVC3 393 aa19.54■□□□□ 0.72
PHRF1-202ENST00000413872 ARPP21Q9UBL0 812 aaPredicted RBP19.54■□□□□ 0.72
PHRF1-202ENST00000413872 TUBB4AP04350 444 aa19.53■□□□□ 0.72
PHRF1-202ENST00000413872 CCDC129Q6ZRS4 1044 aa19.53■□□□□ 0.72
PHRF1-202ENST00000413872 ELP1O95163 1332 aa19.53■□□□□ 0.72
PHRF1-202ENST00000413872 CKAP4Q07065 602 aaKnown RBP19.53■□□□□ 0.72
PHRF1-202ENST00000413872 ABCC4O15439 1325 aa19.53■□□□□ 0.72
PHRF1-202ENST00000413872 PPIP5K2O43314 1243 aa19.53■□□□□ 0.72
PHRF1-202ENST00000413872 LETM2Q2VYF4 491 aa19.53■□□□□ 0.72
PHRF1-202ENST00000413872 ZNF772Q68DY9 489 aaPredicted RBP19.53■□□□□ 0.72
PHRF1-202ENST00000413872 CNKSR1Q969H4 720 aa19.53■□□□□ 0.72
PHRF1-202ENST00000413872 IVNS1ABPQ9Y6Y0 642 aa19.53■□□□□ 0.72
PHRF1-202ENST00000413872 CLASP1Q7Z460 1538 aa19.53■□□□□ 0.72
PHRF1-202ENST00000413872 SLC1A4P43007 532 aa19.53■□□□□ 0.72
PHRF1-202ENST00000413872 HLTFQ14527 1009 aaKnown RBP eCLIP19.53■□□□□ 0.72
PHRF1-202ENST00000413872 GOPCQ9HD26 462 aa19.53■□□□□ 0.72
PHRF1-202ENST00000413872 ZNF532Q9HCE3 1301 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 LOC102724428A0A0B4J2F2 783 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 SIK1P57059 783 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 AOPEPQ8N6M6 819 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 SSH3Q8TE77 659 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 LMBR1Q8WVP7 490 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 JADE2Q9NQC1 790 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 PREX2Q70Z35 1606 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 MAP3K15Q6ZN16 1313 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 ZAP70P43403 619 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 C16orf45Q96MC5 204 aaPredicted RBP19.52■□□□□ 0.72
PHRF1-202ENST00000413872 H7C1D1 291 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 ZBED4O75132 1171 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 TEKT1Q969V4 418 aa19.52■□□□□ 0.72
PHRF1-202ENST00000413872 KRT25Q7Z3Z0 450 aa19.52■□□□□ 0.71
PHRF1-202ENST00000413872 USP6P35125 1406 aa19.51■□□□□ 0.71
PHRF1-202ENST00000413872 SYT1P21579 422 aa19.51■□□□□ 0.71
PHRF1-202ENST00000413872 GNG11P61952 73 aa19.51■□□□□ 0.71
PHRF1-202ENST00000413872 FAM196AQ6ZSG2 479 aa19.51■□□□□ 0.71
PHRF1-202ENST00000413872 WDR17Q8IZU2 1322 aa19.51■□□□□ 0.71
PHRF1-202ENST00000413872 SPATA31E1Q6ZUB1 1445 aa19.51■□□□□ 0.71
PHRF1-202ENST00000413872 KRT83P78385 493 aa19.51■□□□□ 0.71
PHRF1-202ENST00000413872 IGSF1Q8N6C5 1336 aa19.51■□□□□ 0.71
PHRF1-202ENST00000413872 ANKARQ7Z5J8 1434 aa19.51■□□□□ 0.71
PHRF1-202ENST00000413872 IL6STP40189 918 aaPredicted RBP19.51■□□□□ 0.71
PHRF1-202ENST00000413872 KIAA0753Q2KHM9 967 aa19.51■□□□□ 0.71
PHRF1-202ENST00000413872 CCDC113Q9H0I3 377 aa19.51■□□□□ 0.71
PHRF1-202ENST00000413872 ZCCHC11Q5TAX3 1644 aaKnown RBP19.51■□□□□ 0.71
PHRF1-202ENST00000413872 SPECC1Q5M775 1068 aa19.5■□□□□ 0.71
PHRF1-202ENST00000413872 SELENOOQ9BVL4 669 aa19.5■□□□□ 0.71
PHRF1-202ENST00000413872 SNX14Q9Y5W7 946 aa19.5■□□□□ 0.71
PHRF1-202ENST00000413872 TYRO3Q06418 890 aa19.5■□□□□ 0.71
PHRF1-202ENST00000413872 DNAJC25Q9H1X3 360 aa19.5■□□□□ 0.71
PHRF1-202ENST00000413872 MRVI1Q9Y6F6 885 aa19.5■□□□□ 0.71
PHRF1-202ENST00000413872 TTC37Q6PGP7 1564 aa19.5■□□□□ 0.71
PHRF1-202ENST00000413872 NEK11Q8NG66 645 aa19.5■□□□□ 0.71
PHRF1-202ENST00000413872 FAM227BQ96M60 508 aa19.5■□□□□ 0.71
PHRF1-202ENST00000413872 PAXBP1Q9Y5B6 917 aa19.5■□□□□ 0.71
PHRF1-202ENST00000413872 TMC4Q7Z404 712 aa19.5■□□□□ 0.71
PHRF1-202ENST00000413872 QTRT2Q9H974 415 aaKnown RBP19.5■□□□□ 0.71
PHRF1-202ENST00000413872 V9GY48 417 aaPredicted RBP19.5■□□□□ 0.71
PHRF1-202ENST00000413872 OTUD7AQ8TE49 926 aaPredicted RBP19.49■□□□□ 0.71
PHRF1-202ENST00000413872 CEP83Q9Y592 693 aa19.49■□□□□ 0.71
PHRF1-202ENST00000413872 USP44Q9H0E7 712 aa19.49■□□□□ 0.71
PHRF1-202ENST00000413872 CGNQ9P2M7 1197 aaKnown RBP19.49■□□□□ 0.71
PHRF1-202ENST00000413872 TACC1O75410 805 aa19.49■□□□□ 0.71
PHRF1-202ENST00000413872 SMTNP53814 917 aa19.49■□□□□ 0.71
PHRF1-202ENST00000413872 VWA3AA6NCI4 1184 aa19.49■□□□□ 0.71
PHRF1-202ENST00000413872 MFSD14BQ5SR56 506 aa19.49■□□□□ 0.71
PHRF1-202ENST00000413872 ADCY7P51828 1080 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 FAM160A1Q05DH4 1040 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 TM6SF1Q9BZW5 370 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 CCT6AP40227 531 aaKnown RBP19.48■□□□□ 0.71
PHRF1-202ENST00000413872 MAP3K9P80192 1104 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 SMC1AQ14683 1233 aaKnown RBP19.48■□□□□ 0.71
PHRF1-202ENST00000413872 NONOQ15233 471 aaKnown RBP eCLIP19.48■□□□□ 0.713e-7■■■■□ 23.5
PHRF1-202ENST00000413872 FCHSD1Q86WN1 690 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 BBXQ8WY36 941 aaPredicted RBP19.48■□□□□ 0.71
PHRF1-202ENST00000413872 ZNF174Q15697 407 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 PRDM1O75626 825 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 MCTP2Q6DN12 878 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 CCDC97Q96F63 343 aaPredicted RBP19.48■□□□□ 0.71
PHRF1-202ENST00000413872 ROBO2Q9HCK4 1378 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 SHROOM2Q13796 1616 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 SHTN1A0MZ66 631 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 FSD2A1L4K1 749 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 ZBTB21Q9ULJ3 1066 aa19.48■□□□□ 0.71
PHRF1-202ENST00000413872 MAP2K1Q02750 393 aaPredicted RBP19.47■□□□□ 0.71
PHRF1-202ENST00000413872 AKNAD1Q5T1N1 836 aa19.47■□□□□ 0.71
PHRF1-202ENST00000413872 ANO1Q5XXA6 986 aa19.47■□□□□ 0.71
PHRF1-202ENST00000413872 MAPKAPK5Q8IW41 473 aa19.47■□□□□ 0.71
PHRF1-202ENST00000413872 BEND3Q5T5X7 828 aa19.47■□□□□ 0.71
PHRF1-202ENST00000413872 PNMA2Q9UL42 364 aa19.47■□□□□ 0.71
PHRF1-202ENST00000413872 TTF2Q9UNY4 1162 aaKnown RBP19.47■□□□□ 0.71
PHRF1-202ENST00000413872 GTF2IP78347 998 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms