RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 PPP4CP60510 307 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 RASGRF1Q13972 1273 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 TTLL12Q14166 644 aaPredicted RBP7.82□□□□□ -1.16
USP54-202ENST00000413442 TTC39AQ5SRH9 613 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 TICAM2Q86XR7 235 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 RHPN1Q8TCX5 695 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 VEZTQ9HBM0 779 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 HMG20BQ9P0W2 317 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 LRP2BPQ9P2M1 347 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 ABCF2Q9UG63 623 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 IQSEC3Q9UPP2 1182 aaPredicted RBP7.82□□□□□ -1.16
USP54-202ENST00000413442 TNNQ9UQP3 1299 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 COG6Q9Y2V7 657 aa7.82□□□□□ -1.16
USP54-202ENST00000413442 GAKO14976 1311 aa7.81□□□□□ -1.16
USP54-202ENST00000413442 TBC1D12O60347 775 aa7.81□□□□□ -1.16
USP54-202ENST00000413442 USP2O75604 605 aaPredicted RBP7.81□□□□□ -1.16
USP54-202ENST00000413442 MAP3K9P80192 1104 aa7.81□□□□□ -1.16
USP54-202ENST00000413442 MAP3K10Q02779 954 aa7.81□□□□□ -1.16
USP54-202ENST00000413442 FMR1Q06787 632 aaKnown RBP eCLIP7.81□□□□□ -1.16
USP54-202ENST00000413442 TBC1D2Q9BYX2 928 aa7.81□□□□□ -1.16
USP54-202ENST00000413442 DHX36Q9H2U1 1008 aaKnown RBP7.81□□□□□ -1.16
USP54-202ENST00000413442 DCTPP1Q9H773 170 aa7.81□□□□□ -1.16
USP54-202ENST00000413442 ZCCHC17Q9NP64 241 aaKnown RBP7.81□□□□□ -1.16
USP54-202ENST00000413442 GINM1Q9NU53 330 aa7.81□□□□□ -1.16
USP54-202ENST00000413442 USP40Q9NVE5 1235 aa7.81□□□□□ -1.16
USP54-202ENST00000413442 ANGEL1Q9UNK9 670 aaKnown RBP7.81□□□□□ -1.16
USP54-202ENST00000413442 CSADQ9Y600 493 aa7.81□□□□□ -1.16
USP54-202ENST00000413442 LAMB1P07942 1786 aa7.81□□□□□ -1.16
USP54-202ENST00000413442 CEP350Q5VT06 3117 aa7.81□□□□□ -1.16
USP54-202ENST00000413442 ASTN2O75129 1339 aaPredicted RBP7.8□□□□□ -1.16
USP54-202ENST00000413442 AK9Q5TCS8 1911 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 CLRN2A0PK11 232 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 TESPA1A2RU30 521 aaPredicted RBP7.8□□□□□ -1.16
USP54-202ENST00000413442 UBE2Q2LH0YL09 131 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 IFIT2P09913 472 aaKnown RBP7.8□□□□□ -1.16
USP54-202ENST00000413442 PRDX5P30044 214 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 ADORA1P30542 326 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 KIF23Q02241 960 aaPredicted RBP7.8□□□□□ -1.16
USP54-202ENST00000413442 MAP3K12Q12852 859 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 ARHGEF6Q15052 776 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 LRRFIP1Q32MZ4 808 aaKnown RBP7.8□□□□□ -1.16
USP54-202ENST00000413442 NBPF12Q5TAG4 269 aaPredicted RBP7.8□□□□□ -1.16
USP54-202ENST00000413442 SPRYD7Q5W111 196 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 CDC42EP5Q6NZY7 148 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 FOXP4Q8IVH2 680 aaPredicted RBP7.8□□□□□ -1.16
USP54-202ENST00000413442 NSUN4Q96CB9 384 aaKnown RBP7.8□□□□□ -1.16
USP54-202ENST00000413442 EAF2Q96CJ1 260 aaPredicted RBP7.8□□□□□ -1.16
USP54-202ENST00000413442 TEPSINQ96N21 525 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 CSRNP1Q96S65 589 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 ZNF341Q9BYN7 854 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 LRRCC1Q9C099 1032 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 ZNF112Q9UJU3 913 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 DAGLAQ9Y4D2 1042 aa7.8□□□□□ -1.16
USP54-202ENST00000413442 COL2A1P02458 1487 aaPredicted RBP7.8□□□□□ -1.16
USP54-202ENST00000413442 MROH7-TTC4A0A0A0MT08 1334 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 TCP10L2B9ZVM9 353 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 MCAMP43121 646 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 MECOMQ03112 1051 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 PPATQ06203 517 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 C1QBPQ07021 282 aaKnown RBP7.79□□□□□ -1.16
USP54-202ENST00000413442 PKN2Q16513 984 aaKnown RBP7.79□□□□□ -1.16
USP54-202ENST00000413442 NAA16Q6N069 864 aaPredicted RBP7.79□□□□□ -1.16
USP54-202ENST00000413442 ZSCAN25Q6NSZ9 544 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 ERO1BQ86YB8 467 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 RASAL3Q86YV0 1011 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 GPATCH3Q96I76 525 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 DBNDD2Q9BQY9 259 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 RAI14Q9P0K7 980 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 ZBTB47Q9UFB7 747 aaPredicted RBP7.79□□□□□ -1.16
USP54-202ENST00000413442 HERC5Q9UII4 1024 aaKnown RBP7.79□□□□□ -1.16
USP54-202ENST00000413442 JAG2Q9Y219 1238 aa7.79□□□□□ -1.16
USP54-202ENST00000413442 FOXN1O15353 648 aa7.78□□□□□ -1.16
USP54-202ENST00000413442 CYP2E1P05181 493 aaPredicted RBP7.78□□□□□ -1.16
USP54-202ENST00000413442 ATP5JP18859 108 aa7.78□□□□□ -1.16
USP54-202ENST00000413442 GTF2A2P52657 109 aa7.78□□□□□ -1.16
USP54-202ENST00000413442 RRP1P56182 461 aaKnown RBP7.78□□□□□ -1.16
USP54-202ENST00000413442 PRAMEF18Q5VWM3 479 aa7.78□□□□□ -1.16
USP54-202ENST00000413442 AACSQ86V21 672 aa7.78□□□□□ -1.16
USP54-202ENST00000413442 SIRT2Q8IXJ6 389 aa7.78□□□□□ -1.16
USP54-202ENST00000413442 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.78□□□□□ -1.16
USP54-202ENST00000413442 GCC1Q96CN9 775 aa7.78□□□□□ -1.16
USP54-202ENST00000413442 CCDC8Q9H0W5 538 aaPredicted RBP7.78□□□□□ -1.16
USP54-202ENST00000413442 PI4KBQ9UBF8 816 aa7.78□□□□□ -1.16
USP54-202ENST00000413442 DBNLQ9UJU6 430 aaKnown RBP7.78□□□□□ -1.16
USP54-202ENST00000413442 EXOC6BQ9Y2D4 811 aa7.78□□□□□ -1.16
USP54-202ENST00000413442 ATRNL1Q5VV63 1379 aa7.77□□□□□ -1.17
USP54-202ENST00000413442 SPDYE5A6NIY4 337 aa7.77□□□□□ -1.17
USP54-202ENST00000413442 CXCL11O14625 94 aa7.77□□□□□ -1.17
USP54-202ENST00000413442 CTNND1O60716 968 aaKnown RBP7.77□□□□□ -1.17
USP54-202ENST00000413442 AOC2O75106 756 aa7.77□□□□□ -1.17
USP54-202ENST00000413442 HSPA8P11142 646 aaKnown RBP7.77□□□□□ -1.17
USP54-202ENST00000413442 CETPP11597 493 aa7.77□□□□□ -1.17
USP54-202ENST00000413442 BTDP43251 543 aa7.77□□□□□ -1.17
USP54-202ENST00000413442 GRM1Q13255 1194 aa7.77□□□□□ -1.17
USP54-202ENST00000413442 GRIK5Q16478 980 aa7.77□□□□□ -1.17
USP54-202ENST00000413442 NOL9Q5SY16 702 aaKnown RBP7.77□□□□□ -1.17
USP54-202ENST00000413442 IFFO2Q5TF58 517 aa7.77□□□□□ -1.17
USP54-202ENST00000413442 WNK4Q96J92 1243 aa7.77□□□□□ -1.17
USP54-202ENST00000413442 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.77□□□□□ -1.17
USP54-202ENST00000413442 TMEM39BQ9GZU3 492 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms