RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 CDK5RAP2Q96SN8 1893 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 GSG1L2A8MUP6 293 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 PATL2C9JE40 543 aaKnown RBP7.92□□□□□ -1.14
VPS41-204ENST00000413141 K7ELQ4 463 aaPredicted RBP7.92□□□□□ -1.14
VPS41-204ENST00000413141 PRKAB2O43741 272 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 FGAP02671 866 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 PSMA5P28066 241 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 SLC4A3P48751 1232 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 NEK4P51957 841 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 FKBP1AP62942 108 aaKnown RBP7.92□□□□□ -1.14
VPS41-204ENST00000413141 ALX1Q15699 326 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 IMMTQ16891 758 aaKnown RBP7.92□□□□□ -1.14
VPS41-204ENST00000413141 DACT2Q5SW24 774 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 STRIP1Q5VSL9 837 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 IFNL3Q8IZI9 196 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 TTC14Q96N46 770 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 NBPF3Q9H094 633 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 VPS33BQ9H267 617 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 TAOK3Q9H2K8 898 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 ZSWIM6Q9HCJ5 1215 aa7.92□□□□□ -1.14
VPS41-204ENST00000413141 ZNF277Q9NRM2 450 aaPredicted RBP7.92□□□□□ -1.14
VPS41-204ENST00000413141 AATFQ9NY61 560 aaKnown RBP eCLIP7.92□□□□□ -1.14
VPS41-204ENST00000413141 DAXXQ9UER7 740 aaPredicted RBP7.92□□□□□ -1.14
VPS41-204ENST00000413141 USP17L3A6NCW0 530 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 USP17L4A6NCW7 530 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 YDJCA8MPS7 323 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 E7EWF7 191 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 NFKBIEO00221 500 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 APPP05067 770 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 LDHCP07864 332 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 CPA1P15085 419 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 IARSP41252 1262 aaKnown RBP7.91□□□□□ -1.14
VPS41-204ENST00000413141 BTDP43251 543 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 TDO2P48775 406 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 MCM2P49736 904 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 HAND2P61296 217 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 COL9A3Q14050 684 aaPredicted RBP7.91□□□□□ -1.14
VPS41-204ENST00000413141 BLOC1S2Q6QNY1 142 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 RUFY3Q7L099 469 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 USP17L1Q7RTZ2 530 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 CERS3Q8IU89 383 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 TBC1D10CQ8IV04 446 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 SLF2Q8IX21 1173 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 LARGE2Q8N3Y3 721 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 SDR42E1Q8WUS8 393 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 FAM163AQ96GL9 167 aaPredicted RBP7.91□□□□□ -1.14
VPS41-204ENST00000413141 MXD3Q9BW11 206 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 CRNKL1Q9BZJ0 848 aaKnown RBP7.91□□□□□ -1.14
VPS41-204ENST00000413141 NACAP1Q9BZK3 213 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 NAPBQ9H115 298 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 KCNQ5Q9NR82 932 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 BCS1LQ9Y276 419 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 CYP46A1Q9Y6A2 500 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 LTBP3Q9NS15 1303 aa7.91□□□□□ -1.14
VPS41-204ENST00000413141 GPR75-ASB3A0A0A6YYF3 556 aa7.9□□□□□ -1.14
VPS41-204ENST00000413141 ZNF213O14771 459 aa7.9□□□□□ -1.14
VPS41-204ENST00000413141 BAG3O95817 575 aa7.9□□□□□ -1.14
VPS41-204ENST00000413141 RPS6KB1P23443 525 aa7.9□□□□□ -1.14
VPS41-204ENST00000413141 AK2P54819 239 aa7.9□□□□□ -1.14
VPS41-204ENST00000413141 PPP4CP60510 307 aa7.9□□□□□ -1.14
VPS41-204ENST00000413141 GIMAP6Q6P9H5 292 aa7.9□□□□□ -1.14
VPS41-204ENST00000413141 SH3RF3Q8TEJ3 882 aaPredicted RBP7.9□□□□□ -1.14
VPS41-204ENST00000413141 NEK1Q96PY6 1258 aa7.9□□□□□ -1.14
VPS41-204ENST00000413141 NOL10Q9BSC4 688 aaKnown RBP7.9□□□□□ -1.14
VPS41-204ENST00000413141 FHDC1Q9C0D6 1143 aaPredicted RBP7.9□□□□□ -1.14
VPS41-204ENST00000413141 PDRG1Q9NUG6 133 aa7.9□□□□□ -1.14
VPS41-204ENST00000413141 TTF2Q9UNY4 1162 aaKnown RBP7.9□□□□□ -1.14
VPS41-204ENST00000413141 DAGLAQ9Y4D2 1042 aa7.9□□□□□ -1.14
VPS41-204ENST00000413141 BAZ2AQ9UIF9 1905 aaKnown RBP7.9□□□□□ -1.15
VPS41-204ENST00000413141 ECM29Q5VYK3 1845 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 ROBO3Q96MS0 1386 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 NEDD4P46934 1319 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 MYO3BQ8WXR4 1341 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 F8W031 263 aaPredicted RBP7.89□□□□□ -1.15
VPS41-204ENST00000413141 HMGB1P09429 215 aaKnown RBP7.89□□□□□ -1.15
VPS41-204ENST00000413141 RHBDL3P58872 404 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 RASSF7Q02833 373 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 PPARAQ07869 468 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 NOL8Q76FK4 1167 aaKnown RBP7.89□□□□□ -1.15
VPS41-204ENST00000413141 KIAA0825Q8IV33 1275 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 NIM1KQ8IY84 436 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 STAG1Q8WVM7 1258 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 TEKT1Q969V4 418 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 TCEANC2Q96MN5 208 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 DCP1AQ9NPI6 582 aaPredicted RBP7.89□□□□□ -1.15
VPS41-204ENST00000413141 ATP8A2Q9NTI2 1148 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 ARPP21Q9UBL0 812 aaPredicted RBP7.89□□□□□ -1.15
VPS41-204ENST00000413141 ZNRF3Q9ULT6 936 aa7.89□□□□□ -1.15
VPS41-204ENST00000413141 GOLGB1Q14789 3259 aaKnown RBP7.89□□□□□ -1.15
VPS41-204ENST00000413141 FLT1P17948 1338 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 WDR19Q8NEZ3 1342 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 PSMD14O00487 310 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 PLCG2P16885 1265 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 USP5P45974 858 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 CRKP46108 304 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 SCNN1DP51172 638 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 TOB2Q14106 344 aaPredicted RBP7.88□□□□□ -1.15
VPS41-204ENST00000413141 RSBN1LQ6PCB5 846 aaPredicted RBP7.88□□□□□ -1.15
VPS41-204ENST00000413141 CTR9Q6PD62 1173 aa7.88□□□□□ -1.15
VPS41-204ENST00000413141 HHIPL2Q6UWX4 724 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms