RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 CHST3Q7LGC8 479 aa14.79□□□□□ -0.04
CHMP3-204ENST00000409727 RTKN2Q8IZC4 609 aa14.79□□□□□ -0.04
CHMP3-204ENST00000409727 SUPT20HQ8NEM7 779 aa14.79□□□□□ -0.04
CHMP3-204ENST00000409727 LRRC2Q9BYS8 371 aa14.79□□□□□ -0.04
CHMP3-204ENST00000409727 PODNQ7Z5L7 613 aa14.78□□□□□ -0.04
CHMP3-204ENST00000409727 TBC1D10CQ8IV04 446 aa14.78□□□□□ -0.04
CHMP3-204ENST00000409727 CERS5Q8N5B7 392 aa14.78□□□□□ -0.04
CHMP3-204ENST00000409727 NBPF3Q9H094 633 aa14.78□□□□□ -0.04
CHMP3-204ENST00000409727 ZNF277Q9NRM2 450 aaPredicted RBP14.78□□□□□ -0.04
CHMP3-204ENST00000409727 KIAA1551Q9HCM1 1747 aa14.78□□□□□ -0.04
CHMP3-204ENST00000409727 MINDY4BA8MYZ0 360 aa14.78□□□□□ -0.04
CHMP3-204ENST00000409727 CTDSPL2Q05D32 466 aa14.78□□□□□ -0.04
CHMP3-204ENST00000409727 KIAA2012Q0VF49 1180 aa14.78□□□□□ -0.04
CHMP3-204ENST00000409727 NOL10Q9BSC4 688 aaKnown RBP14.78□□□□□ -0.04
CHMP3-204ENST00000409727 INCENPQ9NQS7 918 aa14.78□□□□□ -0.04
CHMP3-204ENST00000409727 LIMCH1Q9UPQ0 1083 aa14.78□□□□□ -0.04
CHMP3-204ENST00000409727 MROH7-TTC4A0A0A0MT08 1334 aa14.78□□□□□ -0.04
CHMP3-204ENST00000409727 FGD1P98174 961 aa14.77□□□□□ -0.05
CHMP3-204ENST00000409727 ALX1Q15699 326 aa14.77□□□□□ -0.05
CHMP3-204ENST00000409727 SLC4A8Q2Y0W8 1093 aa14.77□□□□□ -0.05
CHMP3-204ENST00000409727 SH3RF3Q8TEJ3 882 aaPredicted RBP14.77□□□□□ -0.05
CHMP3-204ENST00000409727 CRNKL1Q9BZJ0 848 aaKnown RBP14.77□□□□□ -0.05
CHMP3-204ENST00000409727 BCS1LQ9Y276 419 aa14.77□□□□□ -0.05
CHMP3-204ENST00000409727 CD2APQ9Y5K6 639 aa14.77□□□□□ -0.05
CHMP3-204ENST00000409727 CYP2D7A0A087X1C5 515 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 BAG3O95817 575 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 LDHCP07864 332 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 BTDP43251 543 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 SCNN1DP51172 638 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 Q6ZUG5 572 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 DHX32Q7L7V1 743 aaKnown RBP14.76□□□□□ -0.05
CHMP3-204ENST00000409727 RALYLQ86SE5 291 aaKnown RBP14.76□□□□□ -0.05
CHMP3-204ENST00000409727 NLGN2Q8NFZ4 835 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 TTF2Q9UNY4 1162 aaKnown RBP14.76□□□□□ -0.05
CHMP3-204ENST00000409727 LARGE1O95461 756 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 HMGB1P09429 215 aaKnown RBP14.76□□□□□ -0.05
CHMP3-204ENST00000409727 TOB2Q14106 344 aaPredicted RBP14.76□□□□□ -0.05
CHMP3-204ENST00000409727 LARGE2Q8N3Y3 721 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 PSMD1Q99460 953 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 TPCN1Q9ULQ1 816 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 LAMA4Q16363 1823 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 ZMYM6O95789 1325 aa14.76□□□□□ -0.05
CHMP3-204ENST00000409727 MYH2Q9UKX2 1941 aa14.75□□□□□ -0.05
CHMP3-204ENST00000409727 SMIM22K7EJ46 135 aa14.75□□□□□ -0.05
CHMP3-204ENST00000409727 USP5P45974 858 aa14.75□□□□□ -0.05
CHMP3-204ENST00000409727 PPARAQ07869 468 aa14.75□□□□□ -0.05
CHMP3-204ENST00000409727 TRDNQ13061 729 aa14.75□□□□□ -0.05
CHMP3-204ENST00000409727 GRIPAP1Q4V328 841 aa14.75□□□□□ -0.05
CHMP3-204ENST00000409727 TMED8Q6PL24 325 aaPredicted RBP14.75□□□□□ -0.05
CHMP3-204ENST00000409727 KIAA0825Q8IV33 1275 aa14.75□□□□□ -0.05
CHMP3-204ENST00000409727 NCOA7Q8NI08 942 aa14.75□□□□□ -0.05
CHMP3-204ENST00000409727 SPON1Q9HCB6 807 aa14.75□□□□□ -0.05
CHMP3-204ENST00000409727 TOMM22Q9NS69 142 aa14.75□□□□□ -0.05
CHMP3-204ENST00000409727 USP17L3A6NCW0 530 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 USP17L4A6NCW7 530 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 YDJCA8MPS7 323 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 RRP12Q5JTH9 1297 aaKnown RBP14.74□□□□□ -0.05
CHMP3-204ENST00000409727 SOGA3Q5TF21 947 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 USP17L1Q7RTZ2 530 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 SLF2Q8IX21 1173 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 NKX2-3Q8TAU0 364 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 DCP1AQ9NPI6 582 aaPredicted RBP14.74□□□□□ -0.05
CHMP3-204ENST00000409727 NEDD4P46934 1319 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 SCN9AQ15858 1988 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 B4E1Z4 1266 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 USP17L12C9JPN9 530 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 USP17L21D6R901 530 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 DTNBO60941 627 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 EVX2Q03828 476 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 STK3Q13188 491 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 ANKRD1Q15327 319 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 ME3Q16798 604 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 STRIP1Q5VSL9 837 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 IL27Q8NEV9 243 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 TGFBRAP1Q8WUH2 860 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 BRF1Q92994 677 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 DAGLAQ9Y4D2 1042 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 TACC3Q9Y6A5 838 aa14.74□□□□□ -0.05
CHMP3-204ENST00000409727 BAZ2AQ9UIF9 1905 aaKnown RBP14.73□□□□□ -0.05
CHMP3-204ENST00000409727 GPR75-ASB3A0A0A6YYF3 556 aa14.73□□□□□ -0.05
CHMP3-204ENST00000409727 PRC1O43663 620 aa14.73□□□□□ -0.05
CHMP3-204ENST00000409727 IGSF3O75054 1194 aa14.73□□□□□ -0.05
CHMP3-204ENST00000409727 EXOSC10Q01780 885 aaKnown RBP14.73□□□□□ -0.05
CHMP3-204ENST00000409727 DACT2Q5SW24 774 aa14.73□□□□□ -0.05
CHMP3-204ENST00000409727 CTR9Q6PD62 1173 aa14.73□□□□□ -0.05
CHMP3-204ENST00000409727 MFSD6Q6ZSS7 791 aa14.73□□□□□ -0.05
CHMP3-204ENST00000409727 CCDC83Q8IWF9 413 aa14.73□□□□□ -0.05
CHMP3-204ENST00000409727 MB21D2Q8IYB1 491 aaPredicted RBP14.73□□□□□ -0.05
CHMP3-204ENST00000409727 NECAB1Q8N987 351 aa14.73□□□□□ -0.05
CHMP3-204ENST00000409727 GPHNQ9NQX3 736 aaPredicted RBP14.73□□□□□ -0.05
CHMP3-204ENST00000409727 MCM9Q9NXL9 1143 aa14.73□□□□□ -0.05
CHMP3-204ENST00000409727 NAP1L2Q9ULW6 460 aaPredicted RBP14.73□□□□□ -0.05
CHMP3-204ENST00000409727 SUGT1Q9Y2Z0 365 aa14.73□□□□□ -0.05
CHMP3-204ENST00000409727 RAD17O75943 681 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 CYP2D6P10635 497 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 MCM5P33992 734 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 C1QBPQ07021 282 aaKnown RBP14.72□□□□□ -0.05
CHMP3-204ENST00000409727 AKNAD1Q5T1N1 836 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 MAPKAPK5Q8IW41 473 aa14.72□□□□□ -0.05
CHMP3-204ENST00000409727 TEX11Q8IYF3 940 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms