RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 PDS5AQ29RF7 1337 aaKnown RBP24.28■■□□□ 1.48
USP39-203ENST00000409470 SCAND2PQ9GZW5 306 aaPredicted RBP24.28■■□□□ 1.48
USP39-203ENST00000409470 TTC6Q86TZ1 520 aa24.27■■□□□ 1.48
USP39-203ENST00000409470 SDR42E1Q8WUS8 393 aa24.27■■□□□ 1.48
USP39-203ENST00000409470 TOMM22Q9NS69 142 aa24.27■■□□□ 1.48
USP39-203ENST00000409470 TFIP11Q9UBB9 837 aaKnown RBP24.27■■□□□ 1.48
USP39-203ENST00000409470 CACNA1SQ13698 1873 aa24.27■■□□□ 1.48
USP39-203ENST00000409470 CHD4Q14839 1912 aa24.27■■□□□ 1.48
USP39-203ENST00000409470 MYH13Q9UKX3 1938 aa24.27■■□□□ 1.48
USP39-203ENST00000409470 KDM4AO75164 1064 aa24.27■■□□□ 1.48
USP39-203ENST00000409470 HMGB2P26583 209 aaKnown RBP24.27■■□□□ 1.48
USP39-203ENST00000409470 NASPP49321 788 aaPredicted RBP24.27■■□□□ 1.48
USP39-203ENST00000409470 TXNRD3Q86VQ6 643 aa24.27■■□□□ 1.48
USP39-203ENST00000409470 LEMD3Q9Y2U8 911 aa24.27■■□□□ 1.48
USP39-203ENST00000409470 TMEM67Q5HYA8 995 aa24.26■■□□□ 1.47
USP39-203ENST00000409470 RRP12Q5JTH9 1297 aaKnown RBP24.26■■□□□ 1.47
USP39-203ENST00000409470 CCDC183Q5T5S1 534 aa24.26■■□□□ 1.47
USP39-203ENST00000409470 NFXL1Q6ZNB6 911 aa24.26■■□□□ 1.47
USP39-203ENST00000409470 STAG1Q8WVM7 1258 aa24.26■■□□□ 1.47
USP39-203ENST00000409470 SPATA32Q96LK8 384 aa24.26■■□□□ 1.47
USP39-203ENST00000409470 RIOK1Q9BRS2 568 aaKnown RBP24.26■■□□□ 1.47
USP39-203ENST00000409470 ZSWIM5Q9P217 1185 aa24.26■■□□□ 1.47
USP39-203ENST00000409470 ELP1O95163 1332 aa24.26■■□□□ 1.47
USP39-203ENST00000409470 DYNLL1P63167 89 aaKnown RBP24.25■■□□□ 1.47
USP39-203ENST00000409470 RBM6P78332 1123 aaKnown RBP24.25■■□□□ 1.47
USP39-203ENST00000409470 IGDCC4Q8TDY8 1250 aa24.25■■□□□ 1.47
USP39-203ENST00000409470 TIAM2Q8IVF5 1701 aa24.25■■□□□ 1.47
USP39-203ENST00000409470 FDPSP14324 419 aaKnown RBP24.25■■□□□ 1.47
USP39-203ENST00000409470 PPARAQ07869 468 aa24.25■■□□□ 1.47
USP39-203ENST00000409470 STK11IPQ8N1F8 1099 aa24.25■■□□□ 1.47
USP39-203ENST00000409470 PROM2Q8N271 834 aa24.25■■□□□ 1.47
USP39-203ENST00000409470 NSUN4Q96CB9 384 aaKnown RBP24.25■■□□□ 1.47
USP39-203ENST00000409470 RNF41Q9H4P4 317 aaPredicted RBP24.25■■□□□ 1.47
USP39-203ENST00000409470 TACC3Q9Y6A5 838 aa24.25■■□□□ 1.47
USP39-203ENST00000409470 XDHP47989 1333 aa24.25■■□□□ 1.47
USP39-203ENST00000409470 MINDY4BA8MYZ0 360 aa24.24■■□□□ 1.47
USP39-203ENST00000409470 IFIT3O14879 490 aaKnown RBP24.24■■□□□ 1.47
USP39-203ENST00000409470 METAP2P50579 478 aaKnown RBP eCLIP24.24■■□□□ 1.472e-7■■■□□ 16.1
USP39-203ENST00000409470 MECOMQ03112 1051 aa24.24■■□□□ 1.47
USP39-203ENST00000409470 ZNF772Q68DY9 489 aaPredicted RBP24.24■■□□□ 1.47
USP39-203ENST00000409470 ZNF384Q8TF68 577 aa24.24■■□□□ 1.47
USP39-203ENST00000409470 GUCY1B3Q02153 619 aa24.23■■□□□ 1.47
USP39-203ENST00000409470 RBM17Q96I25 401 aaKnown RBP24.23■■□□□ 1.47
USP39-203ENST00000409470 RBSNQ9H1K0 784 aa24.23■■□□□ 1.47
USP39-203ENST00000409470 LY9Q9HBG7 655 aa24.23■■□□□ 1.47
USP39-203ENST00000409470 ORC3Q9UBD5 711 aaPredicted RBP24.23■■□□□ 1.47
USP39-203ENST00000409470 IRS2Q9Y4H2 1338 aa24.23■■□□□ 1.47
USP39-203ENST00000409470 CRY2Q49AN0 593 aa24.23■■□□□ 1.47
USP39-203ENST00000409470 APOA5Q6Q788 366 aa24.23■■□□□ 1.47
USP39-203ENST00000409470 SLC51AQ86UW1 340 aa24.23■■□□□ 1.47
USP39-203ENST00000409470 LEO1Q8WVC0 666 aaPredicted RBP24.23■■□□□ 1.47
USP39-203ENST00000409470 SENP2Q9HC62 589 aa24.23■■□□□ 1.47
USP39-203ENST00000409470 JAG2Q9Y219 1238 aa24.23■■□□□ 1.47
USP39-203ENST00000409470 GOLGA6L4A6NEF3 574 aa24.22■■□□□ 1.47
USP39-203ENST00000409470 CFAP45Q9UL16 551 aa24.22■■□□□ 1.47
USP39-203ENST00000409470 ZBTB43O43298 467 aa24.22■■□□□ 1.47
USP39-203ENST00000409470 PRDX5P30044 214 aa24.22■■□□□ 1.47
USP39-203ENST00000409470 DDR1Q08345 913 aa24.22■■□□□ 1.47
USP39-203ENST00000409470 SART3Q15020 963 aaKnown RBP24.22■■□□□ 1.47
USP39-203ENST00000409470 SGMS1Q86VZ5 419 aa24.22■■□□□ 1.47
USP39-203ENST00000409470 MICU3Q86XE3 530 aa24.22■■□□□ 1.47
USP39-203ENST00000409470 ANP32BQ92688 251 aaKnown RBP24.22■■□□□ 1.47
USP39-203ENST00000409470 CCDC69A6NI79 296 aa24.21■■□□□ 1.47
USP39-203ENST00000409470 LETM1O95202 739 aaPredicted RBP24.21■■□□□ 1.47
USP39-203ENST00000409470 RXRAP19793 462 aa24.21■■□□□ 1.47
USP39-203ENST00000409470 LIFRP42702 1097 aa24.21■■□□□ 1.47
USP39-203ENST00000409470 CPLX2Q6PUV4 134 aaKnown RBP24.21■■□□□ 1.47
USP39-203ENST00000409470 C8orf76Q96K31 380 aa24.21■■□□□ 1.47
USP39-203ENST00000409470 BRIP1Q9BX63 1249 aa24.21■■□□□ 1.47
USP39-203ENST00000409470 SPTY2D1Q68D10 685 aaPredicted RBP24.2■■□□□ 1.47
USP39-203ENST00000409470 TSPY26PQ9H489 355 aa24.2■■□□□ 1.47
USP39-203ENST00000409470 SLC12A7Q9Y666 1083 aa24.2■■□□□ 1.47
USP39-203ENST00000409470 POLRMTO00411 1230 aaKnown RBP24.2■■□□□ 1.46
USP39-203ENST00000409470 CDKL5O76039 1030 aa24.2■■□□□ 1.46
USP39-203ENST00000409470 ADD1P35611 737 aaKnown RBP24.2■■□□□ 1.46
USP39-203ENST00000409470 GPSM2P81274 684 aa24.2■■□□□ 1.46
USP39-203ENST00000409470 ZNF804AQ7Z570 1209 aa24.2■■□□□ 1.46
USP39-203ENST00000409470 ANAPC4Q9UJX5 808 aa24.2■■□□□ 1.46
USP39-203ENST00000409470 ERICH2A1L162 156 aa24.19■■□□□ 1.46
USP39-203ENST00000409470 SYNE3Q6ZMZ3 975 aa24.19■■□□□ 1.46
USP39-203ENST00000409470 DZIP1Q86YF9 867 aaKnown RBP24.19■■□□□ 1.46
USP39-203ENST00000409470 CCDC144CPQ8IYA2 1237 aa24.19■■□□□ 1.46
USP39-203ENST00000409470 AATFQ9NY61 560 aaKnown RBP eCLIP24.19■■□□□ 1.46
USP39-203ENST00000409470 GOLGA8AA7E2F4 631 aa24.18■■□□□ 1.46
USP39-203ENST00000409470 ZBTB22O15209 634 aa24.18■■□□□ 1.46
USP39-203ENST00000409470 ZKSCAN3Q9BRR0 538 aa24.18■■□□□ 1.46
USP39-203ENST00000409470 APBA3O96018 575 aa24.18■■□□□ 1.46
USP39-203ENST00000409470 WTAPQ15007 396 aa24.18■■□□□ 1.46
USP39-203ENST00000409470 GIMAP6Q6P9H5 292 aa24.18■■□□□ 1.46
USP39-203ENST00000409470 TMED8Q6PL24 325 aaPredicted RBP24.18■■□□□ 1.46
USP39-203ENST00000409470 WDR66Q8TBY9 1149 aa24.18■■□□□ 1.46
USP39-203ENST00000409470 GPR101Q96P66 508 aaPredicted RBP24.18■■□□□ 1.46
USP39-203ENST00000409470 MYL10Q9BUA6 226 aa24.18■■□□□ 1.46
USP39-203ENST00000409470 CRNKL1Q9BZJ0 848 aaKnown RBP24.18■■□□□ 1.46
USP39-203ENST00000409470 ZNF396Q96N95 335 aaPredicted RBP24.17■■□□□ 1.46
USP39-203ENST00000409470 BBOX1O75936 387 aa24.17■■□□□ 1.46
USP39-203ENST00000409470 UFL1O94874 794 aa24.17■■□□□ 1.46
USP39-203ENST00000409470 ATP2B4P23634 1241 aa24.17■■□□□ 1.46
USP39-203ENST00000409470 CDC27P30260 824 aa24.17■■□□□ 1.46
USP39-203ENST00000409470 CEBPZQ03701 1054 aaKnown RBP24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms