RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ZDHHC15Q96MV8 337 aa16.08■□□□□ 0.16
LIMS1-204ENST00000409441 MYOZ2Q9NPC6 264 aa16.08■□□□□ 0.16
LIMS1-204ENST00000409441 ZNF646O15015 1829 aaPredicted RBP16.07■□□□□ 0.16
LIMS1-204ENST00000409441 POTECB2RU33 542 aa16.07■□□□□ 0.16
LIMS1-204ENST00000409441 DLGAP5Q15398 846 aa16.07■□□□□ 0.16
LIMS1-204ENST00000409441 PRMT6Q96LA8 375 aaPredicted RBP16.07■□□□□ 0.16
LIMS1-204ENST00000409441 HACL1Q9UJ83 578 aa16.07■□□□□ 0.16
LIMS1-204ENST00000409441 CIZ1Q9ULV3 898 aaPredicted RBP16.07■□□□□ 0.16
LIMS1-204ENST00000409441 DAGLAQ9Y4D2 1042 aa16.07■□□□□ 0.16
LIMS1-204ENST00000409441 PCDHAC2Q9Y5I4 1007 aa16.07■□□□□ 0.16
LIMS1-204ENST00000409441 MROH7-TTC4A0A0A0MT08 1334 aa16.07■□□□□ 0.16
LIMS1-204ENST00000409441 GPR75-ASB3A0A0A6YYF3 556 aa16.06■□□□□ 0.16
LIMS1-204ENST00000409441 HIP1O00291 1037 aa16.06■□□□□ 0.16
LIMS1-204ENST00000409441 CHMLP26374 656 aa16.06■□□□□ 0.16
LIMS1-204ENST00000409441 TBC1D10BQ4KMP7 808 aaPredicted RBP16.06■□□□□ 0.16
LIMS1-204ENST00000409441 APOBEC3HQ6NTF7 200 aaKnown RBP16.06■□□□□ 0.16
LIMS1-204ENST00000409441 MIGA1Q8NAN2 632 aa16.06■□□□□ 0.16
LIMS1-204ENST00000409441 MTMR14Q8NCE2 650 aa16.06■□□□□ 0.16
LIMS1-204ENST00000409441 ZNF526Q8TF50 670 aaPredicted RBP16.06■□□□□ 0.16
LIMS1-204ENST00000409441 DIAPH3Q9NSV4 1193 aa16.06■□□□□ 0.16
LIMS1-204ENST00000409441 GAKO14976 1311 aa16.06■□□□□ 0.16
LIMS1-204ENST00000409441 IQCA1LA6NCM1 817 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 K7ELQ4 463 aaPredicted RBP16.05■□□□□ 0.16
LIMS1-204ENST00000409441 EPB41L2O43491 1005 aaKnown RBP16.05■□□□□ 0.16
LIMS1-204ENST00000409441 BAG3O95817 575 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 EGFRP00533 1210 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 ZMYM1Q5SVZ6 1142 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 CWC27Q6UX04 472 aaKnown RBP16.05■□□□□ 0.16
LIMS1-204ENST00000409441 APPBP2Q92624 585 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 OSBP2Q969R2 916 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 FAM227BQ96M60 508 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 NOL10Q9BSC4 688 aaKnown RBP16.05■□□□□ 0.16
LIMS1-204ENST00000409441 PUS7LQ9H0K6 701 aaKnown RBP16.05■□□□□ 0.16
LIMS1-204ENST00000409441 RRAGCQ9HB90 399 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 ADARB2Q9NS39 739 aaKnown RBP16.05■□□□□ 0.16
LIMS1-204ENST00000409441 SPDYE2BA6NHP3 402 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 SPDYE6P0CI01 402 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 EPHX2P34913 555 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 DDIT3P35638 169 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 BTDP43251 543 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 PPP4CP60510 307 aa16.05■□□□□ 0.16
LIMS1-204ENST00000409441 NMIQ13287 307 aaPredicted RBP16.05■□□□□ 0.16
LIMS1-204ENST00000409441 ZBED3Q96IU2 234 aaPredicted RBP16.05■□□□□ 0.16
LIMS1-204ENST00000409441 SEC62Q99442 399 aaKnown RBP16.05■□□□□ 0.16
LIMS1-204ENST00000409441 AATFQ9NY61 560 aaKnown RBP eCLIP16.05■□□□□ 0.16
LIMS1-204ENST00000409441 MYO5AQ9Y4I1 1855 aaKnown RBP16.04■□□□□ 0.16
LIMS1-204ENST00000409441 RFX7Q2KHR2 1363 aa16.04■□□□□ 0.16
LIMS1-204ENST00000409441 MAGEB6P1A0A0J9YX57 407 aa16.04■□□□□ 0.16
LIMS1-204ENST00000409441 WNT10BO00744 389 aa16.04■□□□□ 0.16
LIMS1-204ENST00000409441 VEGFAP15692 232 aaPredicted RBP16.04■□□□□ 0.16
LIMS1-204ENST00000409441 HIRAP54198 1017 aaPredicted RBP16.04■□□□□ 0.16
LIMS1-204ENST00000409441 DYNLL1P63167 89 aaKnown RBP16.04■□□□□ 0.16
LIMS1-204ENST00000409441 KIF4BQ2VIQ3 1234 aa16.04■□□□□ 0.16
LIMS1-204ENST00000409441 NBPF9Q3BBW0 867 aa16.04■□□□□ 0.16
LIMS1-204ENST00000409441 TAF1DQ9H5J8 278 aaPredicted RBP16.04■□□□□ 0.16
LIMS1-204ENST00000409441 HELLSQ9NRZ9 838 aa16.04■□□□□ 0.16
LIMS1-204ENST00000409441 USP40Q9NVE5 1235 aa16.04■□□□□ 0.16
LIMS1-204ENST00000409441 A0A0D9SFI3 127 aa16.03■□□□□ 0.16
LIMS1-204ENST00000409441 MCMDC2Q4G0Z9 681 aa16.03■□□□□ 0.16
LIMS1-204ENST00000409441 CDC42EP5Q6NZY7 148 aa16.03■□□□□ 0.16
LIMS1-204ENST00000409441 TRPM4Q8TD43 1214 aa16.03■□□□□ 0.16
LIMS1-204ENST00000409441 AIDAQ96BJ3 306 aa16.03■□□□□ 0.16
LIMS1-204ENST00000409441 RIOK1Q9BRS2 568 aaKnown RBP16.03■□□□□ 0.16
LIMS1-204ENST00000409441 ESYT1Q9BSJ8 1104 aa16.03■□□□□ 0.16
LIMS1-204ENST00000409441 TDRD3Q9H7E2 651 aaKnown RBP16.03■□□□□ 0.16
LIMS1-204ENST00000409441 DOCK2Q92608 1830 aa16.02■□□□□ 0.16
LIMS1-204ENST00000409441 M0R2C6 588 aa16.02■□□□□ 0.16
LIMS1-204ENST00000409441 MBD4O95243 580 aa16.02■□□□□ 0.16
LIMS1-204ENST00000409441 USP50Q70EL3 339 aaPredicted RBP16.02■□□□□ 0.16
LIMS1-204ENST00000409441 IL27Q8NEV9 243 aa16.02■□□□□ 0.16
LIMS1-204ENST00000409441 RUFY2Q8WXA3 655 aa16.02■□□□□ 0.16
LIMS1-204ENST00000409441 ARMT1Q9H993 441 aa16.02■□□□□ 0.16
LIMS1-204ENST00000409441 NMRK2Q9NPI5 230 aa16.02■□□□□ 0.16
LIMS1-204ENST00000409441 MYO1BO43795 1136 aa16.01■□□□□ 0.15
LIMS1-204ENST00000409441 PLCG2P16885 1265 aa16.01■□□□□ 0.15
LIMS1-204ENST00000409441 RHBDL3P58872 404 aa16.01■□□□□ 0.15
LIMS1-204ENST00000409441 SH3RF3Q8TEJ3 882 aaPredicted RBP16.01■□□□□ 0.15
LIMS1-204ENST00000409441 STRBPQ96SI9 672 aaKnown RBP16.01■□□□□ 0.15
LIMS1-204ENST00000409441 MCCP23508 829 aa16.01■□□□□ 0.15
LIMS1-204ENST00000409441 GSE1Q14687 1217 aa16.01■□□□□ 0.15
LIMS1-204ENST00000409441 CCDC129Q6ZRS4 1044 aa16.01■□□□□ 0.15
LIMS1-204ENST00000409441 PNMA8AQ86V59 439 aaPredicted RBP16.01■□□□□ 0.15
LIMS1-204ENST00000409441 CERS3Q8IU89 383 aa16.01■□□□□ 0.15
LIMS1-204ENST00000409441 LCORLQ8N3X6 602 aa16.01■□□□□ 0.15
LIMS1-204ENST00000409441 SPRYD3Q8NCJ5 442 aa16.01■□□□□ 0.15
LIMS1-204ENST00000409441 ZNF70Q9UC06 446 aaPredicted RBP16.01■□□□□ 0.15
LIMS1-204ENST00000409441 ASTN2O75129 1339 aaPredicted RBP16■□□□□ 0.15
LIMS1-204ENST00000409441 CLRN2A0PK11 232 aa16■□□□□ 0.15
LIMS1-204ENST00000409441 GPAA1O43292 621 aa16■□□□□ 0.15
LIMS1-204ENST00000409441 YY1P25490 414 aa16■□□□□ 0.15
LIMS1-204ENST00000409441 EAPPQ56P03 285 aaPredicted RBP16■□□□□ 0.15
LIMS1-204ENST00000409441 MYH2Q9UKX2 1941 aa16■□□□□ 0.15
LIMS1-204ENST00000409441 WDR90Q96KV7 1748 aa15.99■□□□□ 0.15
LIMS1-204ENST00000409441 ST18O60284 1047 aa15.99■□□□□ 0.15
LIMS1-204ENST00000409441 CACNB3P54284 484 aa15.99■□□□□ 0.15
LIMS1-204ENST00000409441 ANAPC15P60006 121 aa15.99■□□□□ 0.15
LIMS1-204ENST00000409441 SPDYE2Q495Y8 402 aa15.99■□□□□ 0.15
LIMS1-204ENST00000409441 ZNF589Q86UQ0 364 aaPredicted RBP15.99■□□□□ 0.15
LIMS1-204ENST00000409441 TEX11Q8IYF3 940 aa15.99■□□□□ 0.15
LIMS1-204ENST00000409441 IL17RAQ96F46 866 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms