RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 MAGEB6P1A0A0J9YX57 407 aa24.61■■□□□ 1.53
VSX1-203ENST00000409285 SPDYE2BA6NHP3 402 aa24.61■■□□□ 1.53
VSX1-203ENST00000409285 M0R2C6 588 aa24.61■■□□□ 1.53
VSX1-203ENST00000409285 SPDYE6P0CI01 402 aa24.61■■□□□ 1.53
VSX1-203ENST00000409285 PLCG2P16885 1265 aa24.61■■□□□ 1.53
VSX1-203ENST00000409285 MFAP1P55081 439 aaKnown RBP24.61■■□□□ 1.53
VSX1-203ENST00000409285 CFAP100Q494V2 611 aa24.61■■□□□ 1.53
VSX1-203ENST00000409285 APOBEC3HQ6NTF7 200 aaKnown RBP24.61■■□□□ 1.53
VSX1-203ENST00000409285 AIDAQ96BJ3 306 aa24.61■■□□□ 1.53
VSX1-203ENST00000409285 NOL10Q9BSC4 688 aaKnown RBP24.61■■□□□ 1.53
VSX1-203ENST00000409285 GPBP1L1Q9HC44 474 aaPredicted RBP24.61■■□□□ 1.53
VSX1-203ENST00000409285 POLR2AP24928 1970 aaKnown RBP24.61■■□□□ 1.53
VSX1-203ENST00000409285 CCDC171Q6TFL3 1326 aa24.6■■□□□ 1.53
VSX1-203ENST00000409285 GPAA1O43292 621 aa24.6■■□□□ 1.53
VSX1-203ENST00000409285 EIF5BO60841 1220 aaKnown RBP24.6■■□□□ 1.53
VSX1-203ENST00000409285 BTDP43251 543 aa24.6■■□□□ 1.53
VSX1-203ENST00000409285 MIGA1Q8NAN2 632 aa24.6■■□□□ 1.53
VSX1-203ENST00000409285 IL25Q9H293 177 aa24.6■■□□□ 1.53
VSX1-203ENST00000409285 AATFQ9NY61 560 aaKnown RBP eCLIP24.6■■□□□ 1.53
VSX1-203ENST00000409285 H7C1D1 291 aa24.59■■□□□ 1.53
VSX1-203ENST00000409285 MBD4O95243 580 aa24.59■■□□□ 1.53
VSX1-203ENST00000409285 LMOD1P29536 600 aaPredicted RBP24.59■■□□□ 1.53
VSX1-203ENST00000409285 ZNF589Q86UQ0 364 aaPredicted RBP24.59■■□□□ 1.53
VSX1-203ENST00000409285 SHTN1A0MZ66 631 aa24.58■■□□□ 1.53
VSX1-203ENST00000409285 DLGAP5Q15398 846 aa24.58■■□□□ 1.53
VSX1-203ENST00000409285 LCORLQ8N3X6 602 aa24.58■■□□□ 1.53
VSX1-203ENST00000409285 STRBPQ96SI9 672 aaKnown RBP24.58■■□□□ 1.53
VSX1-203ENST00000409285 RPAP1Q9BWH6 1393 aaPredicted RBP24.58■■□□□ 1.53
VSX1-203ENST00000409285 GNAT2P19087 354 aa24.58■■□□□ 1.52
VSX1-203ENST00000409285 RHBDL3P58872 404 aa24.58■■□□□ 1.52
VSX1-203ENST00000409285 IQCA1LA6NCM1 817 aa24.57■■□□□ 1.52
VSX1-203ENST00000409285 RBM5P52756 815 aaKnown RBP eCLIP24.57■■□□□ 1.52
VSX1-203ENST00000409285 PRMT6Q96LA8 375 aaPredicted RBP24.57■■□□□ 1.52
VSX1-203ENST00000409285 ADARB2Q9NS39 739 aaKnown RBP24.57■■□□□ 1.52
VSX1-203ENST00000409285 WNT10BO00744 389 aa24.56■■□□□ 1.52
VSX1-203ENST00000409285 DYNLL1P63167 89 aaKnown RBP24.56■■□□□ 1.52
VSX1-203ENST00000409285 KIF4BQ2VIQ3 1234 aa24.56■■□□□ 1.52
VSX1-203ENST00000409285 ARMT1Q9H993 441 aa24.56■■□□□ 1.52
VSX1-203ENST00000409285 PCDHAC2Q9Y5I4 1007 aa24.56■■□□□ 1.52
VSX1-203ENST00000409285 EPB41L2O43491 1005 aaKnown RBP24.55■■□□□ 1.52
VSX1-203ENST00000409285 EPS15P42566 896 aa24.55■■□□□ 1.52
VSX1-203ENST00000409285 CDC42EP5Q6NZY7 148 aa24.55■■□□□ 1.52
VSX1-203ENST00000409285 CCDC129Q6ZRS4 1044 aa24.55■■□□□ 1.52
VSX1-203ENST00000409285 CRNKL1Q9BZJ0 848 aaKnown RBP24.55■■□□□ 1.52
VSX1-203ENST00000409285 HACL1Q9UJ83 578 aa24.55■■□□□ 1.52
VSX1-203ENST00000409285 ZMYM6O95789 1325 aa24.55■■□□□ 1.52
VSX1-203ENST00000409285 MYH8P13535 1937 aa24.54■■□□□ 1.52
VSX1-203ENST00000409285 NPM3O75607 178 aaKnown RBP24.54■■□□□ 1.52
VSX1-203ENST00000409285 REC8O95072 547 aa24.54■■□□□ 1.52
VSX1-203ENST00000409285 EGFRP00533 1210 aa24.54■■□□□ 1.52
VSX1-203ENST00000409285 SPDYE2Q495Y8 402 aa24.54■■□□□ 1.52
VSX1-203ENST00000409285 SAMD7Q7Z3H4 446 aa24.54■■□□□ 1.52
VSX1-203ENST00000409285 SH3RF3Q8TEJ3 882 aaPredicted RBP24.54■■□□□ 1.52
VSX1-203ENST00000409285 COL2A1P02458 1487 aaPredicted RBP24.54■■□□□ 1.52
VSX1-203ENST00000409285 MYO1BO43795 1136 aa24.53■■□□□ 1.52
VSX1-203ENST00000409285 GIMAP6Q6P9H5 292 aa24.53■■□□□ 1.52
VSX1-203ENST00000409285 DSCC1Q9BVC3 393 aa24.53■■□□□ 1.52
VSX1-203ENST00000409285 SIPA1L1O43166 1804 aa24.52■■□□□ 1.52
VSX1-203ENST00000409285 POTECB2RU33 542 aa24.52■■□□□ 1.52
VSX1-203ENST00000409285 FOXP2O15409 715 aa24.52■■□□□ 1.52
VSX1-203ENST00000409285 TBC1D10BQ4KMP7 808 aaPredicted RBP24.52■■□□□ 1.52
VSX1-203ENST00000409285 FKBP1CQ5VVH2 108 aa24.52■■□□□ 1.52
VSX1-203ENST00000409285 USP50Q70EL3 339 aaPredicted RBP24.52■■□□□ 1.52
VSX1-203ENST00000409285 IDI2Q9BXS1 227 aa24.52■■□□□ 1.52
VSX1-203ENST00000409285 ATP8A2Q9NTI2 1148 aa24.52■■□□□ 1.52
VSX1-203ENST00000409285 USP40Q9NVE5 1235 aa24.52■■□□□ 1.52
VSX1-203ENST00000409285 WDHD1O75717 1129 aaPredicted RBP24.51■■□□□ 1.51
VSX1-203ENST00000409285 HSPD1P10809 573 aaKnown RBP24.51■■□□□ 1.51
VSX1-203ENST00000409285 NBPF9Q3BBW0 867 aa24.51■■□□□ 1.51
VSX1-203ENST00000409285 TEX11Q8IYF3 940 aa24.51■■□□□ 1.51
VSX1-203ENST00000409285 TRPM4Q8TD43 1214 aa24.51■■□□□ 1.51
VSX1-203ENST00000409285 BACH2Q9BYV9 841 aa24.51■■□□□ 1.51
VSX1-203ENST00000409285 NMRK2Q9NPI5 230 aa24.51■■□□□ 1.51
VSX1-203ENST00000409285 SLC4A4Q9Y6R1 1079 aa24.51■■□□□ 1.51
VSX1-203ENST00000409285 GSG1L2A8MUP6 293 aa24.51■■□□□ 1.51
VSX1-203ENST00000409285 PATL2C9JE40 543 aaKnown RBP24.51■■□□□ 1.51
VSX1-203ENST00000409285 EPHX2P34913 555 aa24.51■■□□□ 1.51
VSX1-203ENST00000409285 KIAA1211Q6ZU35 1233 aa24.51■■□□□ 1.51
VSX1-203ENST00000409285 LSG1Q9H089 658 aaKnown RBP24.51■■□□□ 1.51
VSX1-203ENST00000409285 TDRD3Q9H7E2 651 aaKnown RBP24.51■■□□□ 1.51
VSX1-203ENST00000409285 MKRN1Q9UHC7 482 aaKnown RBP24.51■■□□□ 1.51
VSX1-203ENST00000409285 ALX1Q15699 326 aa24.5■■□□□ 1.51
VSX1-203ENST00000409285 VPS53Q5VIR6 699 aa24.5■■□□□ 1.51
VSX1-203ENST00000409285 TAF1DQ9H5J8 278 aaPredicted RBP24.5■■□□□ 1.51
VSX1-203ENST00000409285 RRAGCQ9HB90 399 aa24.5■■□□□ 1.51
VSX1-203ENST00000409285 ANO2Q9NQ90 1003 aa24.5■■□□□ 1.51
VSX1-203ENST00000409285 TMOD2Q9NZR1 351 aa24.5■■□□□ 1.51
VSX1-203ENST00000409285 ZNF70Q9UC06 446 aaPredicted RBP24.5■■□□□ 1.51
VSX1-203ENST00000409285 PITPNM2Q9BZ72 1349 aa24.5■■□□□ 1.51
VSX1-203ENST00000409285 HIRAP54198 1017 aaPredicted RBP24.49■■□□□ 1.51
VSX1-203ENST00000409285 SDR42E1Q8WUS8 393 aa24.49■■□□□ 1.51
VSX1-203ENST00000409285 MAP4K1Q92918 833 aa24.49■■□□□ 1.51
VSX1-203ENST00000409285 DCP1AQ9NPI6 582 aaPredicted RBP24.49■■□□□ 1.51
VSX1-203ENST00000409285 FLT1P17948 1338 aa24.49■■□□□ 1.51
VSX1-203ENST00000409285 PRKAB2O43741 272 aa24.48■■□□□ 1.51
VSX1-203ENST00000409285 PNMA8AQ86V59 439 aaPredicted RBP24.48■■□□□ 1.51
VSX1-203ENST00000409285 ZC3H15Q8WU90 426 aaKnown RBP24.48■■□□□ 1.51
VSX1-203ENST00000409285 NACAP1Q9BZK3 213 aa24.48■■□□□ 1.51
VSX1-203ENST00000409285 EPB41L4AQ9HCS5 686 aaPredicted RBP24.48■■□□□ 1.51
VSX1-203ENST00000409285 ENTPD3O75355 529 aa24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms