RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 CHST3Q7LGC8 479 aa4.5□□□□□ -1.69
RTN4-209ENST00000405240 CNKSR2Q8WXI2 1034 aa4.5□□□□□ -1.69
RTN4-209ENST00000405240 FAM89AQ96GI7 184 aa4.5□□□□□ -1.69
RTN4-209ENST00000405240 TRIM5Q9C035 493 aa4.5□□□□□ -1.69
RTN4-209ENST00000405240 TMOD3Q9NYL9 352 aa4.5□□□□□ -1.69
RTN4-209ENST00000405240 ANGEL1Q9UNK9 670 aaKnown RBP4.5□□□□□ -1.69
RTN4-209ENST00000405240 TAF1P21675 1872 aa4.5□□□□□ -1.69
RTN4-209ENST00000405240 KLF18A0A0U1RQI7 1052 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 ZNF213O14771 459 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 RANBP6O60518 1105 aaKnown RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 FGRP09769 529 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 UQCRFS1P1P0C7P4 283 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 CDC27P30260 824 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 IL6STP40189 918 aaPredicted RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 NCBP1Q09161 790 aaKnown RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 CCDC93Q567U6 631 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 CCDC73Q6ZRK6 1079 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 MPNDQ8N594 471 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 C8orf76Q96K31 380 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.49□□□□□ -1.69
RTN4-209ENST00000405240 EPB41L4AQ9HCS5 686 aaPredicted RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 FAM13BQ9NYF5 915 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 PRDM4Q9UKN5 801 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 MYH1P12882 1939 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 TAF1LQ8IZX4 1826 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 BAZ2AQ9UIF9 1905 aaKnown RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 PATL2C9JE40 543 aaKnown RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 RGL2O15211 777 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 KINO60870 393 aaKnown RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 ZNF202O95125 648 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 STARD3NLO95772 234 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 PDE6AP16499 860 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 SARSP49591 514 aaKnown RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 GSDMDP57764 484 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 CCDC102BQ68D86 513 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 APOA5Q6Q788 366 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 SHC4Q6S5L8 630 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 PI16Q6UXB8 463 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 CCAR2Q8N163 923 aaKnown RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 SYNE4Q8N205 404 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 STAG1Q8WVM7 1258 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 ANAPC4Q9UJX5 808 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 DENND2AQ9ULE3 1009 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 CHMP3Q9Y3E7 222 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 ANKRD18BA2A2Z9 1011 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 PSDA5PKW4 1024 aaPredicted RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 FMNL1O95466 1100 aaPredicted RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 TUBB4AP04350 444 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 PFKFB1P16118 471 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 FKBP4Q02790 459 aaKnown RBP eCLIP4.49□□□□□ -1.69
RTN4-209ENST00000405240 UTP14CQ5TAP6 766 aaKnown RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 CEP57L1Q8IYX8 460 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 SPATA20Q8TB22 786 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 LPIN2Q92539 896 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.49□□□□□ -1.69
RTN4-209ENST00000405240 NAT10Q9H0A0 1025 aaKnown RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 L2HGDHQ9H9P8 463 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 SENP2Q9HC62 589 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 ORC3Q9UBD5 711 aaPredicted RBP4.49□□□□□ -1.69
RTN4-209ENST00000405240 LY75O60449 1722 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 ZNF804BA4D1E1 1349 aa4.49□□□□□ -1.69
RTN4-209ENST00000405240 COL1A1P02452 1464 aaPredicted RBP4.48□□□□□ -1.69
RTN4-209ENST00000405240 A0A1B0GVL5 298 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 USP27XA6NNY8 438 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 GOLGA8BA8MQT2 603 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 EIF5P55010 431 aaKnown RBP4.48□□□□□ -1.69
RTN4-209ENST00000405240 TBX2Q13207 712 aaPredicted RBP4.48□□□□□ -1.69
RTN4-209ENST00000405240 ARID5BQ14865 1188 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 PUM3Q15397 648 aaKnown RBP4.48□□□□□ -1.69
RTN4-209ENST00000405240 DPCR1Q3MIW9 517 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 ARMCX5Q6P1M9 558 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 INTS5Q6P9B9 1019 aaKnown RBP4.48□□□□□ -1.69
RTN4-209ENST00000405240 ZNF579Q8NAF0 562 aaKnown RBP4.48□□□□□ -1.69
RTN4-209ENST00000405240 ZNF532Q9HCE3 1301 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 GSG1L2A8MUP6 293 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 IRS4O14654 1257 aaPredicted RBP4.48□□□□□ -1.69
RTN4-209ENST00000405240 CDKL5O76039 1030 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 IFNAR1P17181 557 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 ME1P48163 572 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 TOB1P50616 345 aaPredicted RBP4.48□□□□□ -1.69
RTN4-209ENST00000405240 E4F1Q66K89 784 aaPredicted RBP4.48□□□□□ -1.69
RTN4-209ENST00000405240 KRT40Q6A162 431 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 OTUD7BQ6GQQ9 843 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 TSC1Q92574 1164 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 WWC3Q9ULE0 1092 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 TNRC6CQ9HCJ0 1690 aaKnown RBP4.48□□□□□ -1.69
RTN4-209ENST00000405240 CCDC69A6NI79 296 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 CUTAO60888 179 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 PHKA1P46020 1223 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 METTL24Q5JXM2 366 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 SLC9C2Q5TAH2 1124 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 LDHAL6AQ6ZMR3 332 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 TMEM139Q8IV31 216 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 IFNL3Q8IZI9 196 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 STK11IPQ8N1F8 1099 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 AOPEPQ8N6M6 819 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 FEZ1Q99689 392 aa4.48□□□□□ -1.69
RTN4-209ENST00000405240 BCL11BQ9C0K0 894 aaPredicted RBP4.48□□□□□ -1.69
RTN4-209ENST00000405240 GOLGA6L19H0YKK7 550 aa4.47□□□□□ -1.69
RTN4-209ENST00000405240 TNNT1P13805 278 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms