RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SMC1BQ8NDV3 1235 aa17■□□□□ 0.31
SKA1-202ENST00000398452 OSBP2Q969R2 916 aa17■□□□□ 0.31
SKA1-202ENST00000398452 SEC62Q99442 399 aaKnown RBP17■□□□□ 0.31
SKA1-202ENST00000398452 HDAC9Q9UKV0 1011 aa17■□□□□ 0.31
SKA1-202ENST00000398452 TTF2Q9UNY4 1162 aaKnown RBP17■□□□□ 0.31
SKA1-202ENST00000398452 TIAM2Q8IVF5 1701 aa16.99■□□□□ 0.31
SKA1-202ENST00000398452 M0R2C6 588 aa16.99■□□□□ 0.31
SKA1-202ENST00000398452 RAD17O75943 681 aa16.99■□□□□ 0.31
SKA1-202ENST00000398452 DDNO94850 711 aaPredicted RBP16.99■□□□□ 0.31
SKA1-202ENST00000398452 DCBLD2Q96PD2 775 aa16.99■□□□□ 0.31
SKA1-202ENST00000398452 NACAP1Q9BZK3 213 aa16.99■□□□□ 0.31
SKA1-202ENST00000398452 PUS7LQ9H0K6 701 aaKnown RBP16.99■□□□□ 0.31
SKA1-202ENST00000398452 FER1L6Q2WGJ9 1857 aa16.99■□□□□ 0.31
SKA1-202ENST00000398452 TCRBV5S4A2TA0A5A2 114 aa16.98■□□□□ 0.31
SKA1-202ENST00000398452 MBD4O95243 580 aa16.98■□□□□ 0.31
SKA1-202ENST00000398452 PLCG2P16885 1265 aa16.98■□□□□ 0.31
SKA1-202ENST00000398452 DACT2Q5SW24 774 aa16.98■□□□□ 0.31
SKA1-202ENST00000398452 RSBN1LQ6PCB5 846 aaPredicted RBP16.98■□□□□ 0.31
SKA1-202ENST00000398452 CCDC129Q6ZRS4 1044 aa16.98■□□□□ 0.31
SKA1-202ENST00000398452 OGFOD1Q8N543 542 aa16.98■□□□□ 0.31
SKA1-202ENST00000398452 MIGA1Q8NAN2 632 aa16.98■□□□□ 0.31
SKA1-202ENST00000398452 TEKT1Q969V4 418 aa16.98■□□□□ 0.31
SKA1-202ENST00000398452 USP26Q9BXU7 913 aa16.98■□□□□ 0.31
SKA1-202ENST00000398452 CTNNA3Q9UI47 895 aa16.98■□□□□ 0.31
SKA1-202ENST00000398452 POTECB2RU33 542 aa16.97■□□□□ 0.31
SKA1-202ENST00000398452 ZKSCAN1P17029 563 aaPredicted RBP16.97■□□□□ 0.31
SKA1-202ENST00000398452 RBM5P52756 815 aaKnown RBP eCLIP16.97■□□□□ 0.31
SKA1-202ENST00000398452 SLFNL1Q499Z3 407 aa16.97■□□□□ 0.31
SKA1-202ENST00000398452 ZNF589Q86UQ0 364 aaPredicted RBP16.97■□□□□ 0.31
SKA1-202ENST00000398452 KIAA0825Q8IV33 1275 aa16.97■□□□□ 0.31
SKA1-202ENST00000398452 DNAJC5GQ8N7S2 189 aa16.97■□□□□ 0.31
SKA1-202ENST00000398452 DSCC1Q9BVC3 393 aa16.97■□□□□ 0.31
SKA1-202ENST00000398452 CRNKL1Q9BZJ0 848 aaKnown RBP16.97■□□□□ 0.31
SKA1-202ENST00000398452 ARMT1Q9H993 441 aa16.97■□□□□ 0.31
SKA1-202ENST00000398452 MROH7-TTC4A0A0A0MT08 1334 aa16.96■□□□□ 0.31
SKA1-202ENST00000398452 MYH7P12883 1935 aa16.96■□□□□ 0.31
SKA1-202ENST00000398452 YDJCA8MPS7 323 aa16.96■□□□□ 0.31
SKA1-202ENST00000398452 PSMD14O00487 310 aa16.96■□□□□ 0.31
SKA1-202ENST00000398452 CHGBP05060 677 aa16.96■□□□□ 0.31
SKA1-202ENST00000398452 DIXDC1Q155Q3 683 aa16.96■□□□□ 0.31
SKA1-202ENST00000398452 AGBL3Q8NEM8 1001 aa16.96■□□□□ 0.31
SKA1-202ENST00000398452 LSG1Q9H089 658 aaKnown RBP16.96■□□□□ 0.31
SKA1-202ENST00000398452 KCNQ5Q9NR82 932 aa16.96■□□□□ 0.31
SKA1-202ENST00000398452 AATFQ9NY61 560 aaKnown RBP eCLIP16.96■□□□□ 0.31
SKA1-202ENST00000398452 SLC4A4Q9Y6R1 1079 aa16.96■□□□□ 0.31
SKA1-202ENST00000398452 DOCK2Q92608 1830 aa16.96■□□□□ 0.3
SKA1-202ENST00000398452 RPAP1Q9BWH6 1393 aaPredicted RBP16.95■□□□□ 0.3
SKA1-202ENST00000398452 VIL1P09327 827 aaKnown RBP16.95■□□□□ 0.3
SKA1-202ENST00000398452 HDLBPQ00341 1268 aaKnown RBP16.95■□□□□ 0.3
SKA1-202ENST00000398452 HHIPL2Q6UWX4 724 aa16.95■□□□□ 0.3
SKA1-202ENST00000398452 AMOTL1Q8IY63 956 aa16.95■□□□□ 0.3
SKA1-202ENST00000398452 TBC1D32Q96NH3 1257 aa16.95■□□□□ 0.3
SKA1-202ENST00000398452 MXD3Q9BW11 206 aa16.95■□□□□ 0.3
SKA1-202ENST00000398452 TSHZ2Q9NRE2 1034 aa16.95■□□□□ 0.3
SKA1-202ENST00000398452 DICER1Q9UPY3 1922 aaKnown RBP16.94■□□□□ 0.3
SKA1-202ENST00000398452 PATL2C9JE40 543 aaKnown RBP16.94■□□□□ 0.3
SKA1-202ENST00000398452 HSPD1P10809 573 aaKnown RBP16.94■□□□□ 0.3
SKA1-202ENST00000398452 RPS12P25398 132 aaKnown RBP16.94■□□□□ 0.3
SKA1-202ENST00000398452 ANP32AP39687 249 aaKnown RBP16.94■□□□□ 0.3
SKA1-202ENST00000398452 BTDP43251 543 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 TDO2P48775 406 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 MMP14P50281 582 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 CXCL9Q07325 125 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 LCORLQ8N3X6 602 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 CERS5Q8N5B7 392 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 MAP4K1Q92918 833 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 FAM163AQ96GL9 167 aaPredicted RBP16.94■□□□□ 0.3
SKA1-202ENST00000398452 STRBPQ96SI9 672 aaKnown RBP16.94■□□□□ 0.3
SKA1-202ENST00000398452 MRIQ9BWK5 157 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 NAPBQ9H115 298 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 IL25Q9H293 177 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 RBM8AQ9Y5S9 174 aaKnown RBP16.94■□□□□ 0.3
SKA1-202ENST00000398452 GJA3Q9Y6H8 435 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 MAST2Q6P0Q8 1798 aa16.94■□□□□ 0.3
SKA1-202ENST00000398452 WDR90Q96KV7 1748 aa16.93■□□□□ 0.3
SKA1-202ENST00000398452 USP5P45974 858 aa16.93■□□□□ 0.3
SKA1-202ENST00000398452 CRKP46108 304 aa16.93■□□□□ 0.3
SKA1-202ENST00000398452 RBM25P49756 843 aaKnown RBP16.93■□□□□ 0.3
SKA1-202ENST00000398452 SCNN1DP51172 638 aa16.93■□□□□ 0.3
SKA1-202ENST00000398452 PTH1RQ03431 593 aa16.93■□□□□ 0.3
SKA1-202ENST00000398452 GRIK5Q16478 980 aa16.93■□□□□ 0.3
SKA1-202ENST00000398452 IMMTQ16891 758 aaKnown RBP16.93■□□□□ 0.3
SKA1-202ENST00000398452 SERPINA10Q9UK55 444 aa16.93■□□□□ 0.3
SKA1-202ENST00000398452 GPR75-ASB3A0A0A6YYF3 556 aa16.92■□□□□ 0.3
SKA1-202ENST00000398452 FZD9O00144 591 aa16.92■□□□□ 0.3
SKA1-202ENST00000398452 USP17L8P0C7I0 530 aa16.92■□□□□ 0.3
SKA1-202ENST00000398452 POTEJP0CG39 1038 aa16.92■□□□□ 0.3
SKA1-202ENST00000398452 HSPA4P34932 840 aa16.92■□□□□ 0.3
SKA1-202ENST00000398452 ANAPC15P60006 121 aa16.92■□□□□ 0.3
SKA1-202ENST00000398452 PPP4CP60510 307 aa16.92■□□□□ 0.3
SKA1-202ENST00000398452 DYNLL1P63167 89 aaKnown RBP16.92■□□□□ 0.3
SKA1-202ENST00000398452 ADGRA1Q86SQ6 560 aa16.92■□□□□ 0.3
SKA1-202ENST00000398452 KLRG1Q96E93 195 aa16.92■□□□□ 0.3
SKA1-202ENST00000398452 TMOD2Q9NZR1 351 aa16.92■□□□□ 0.3
SKA1-202ENST00000398452 GAKO14976 1311 aa16.92■□□□□ 0.3
SKA1-202ENST00000398452 ZNF213O14771 459 aa16.91■□□□□ 0.3
SKA1-202ENST00000398452 KRT32Q14532 448 aa16.91■□□□□ 0.3
SKA1-202ENST00000398452 VPS53Q5VIR6 699 aa16.91■□□□□ 0.3
SKA1-202ENST00000398452 TEX11Q8IYF3 940 aa16.91■□□□□ 0.3
SKA1-202ENST00000398452 RIOK1Q9BRS2 568 aaKnown RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms