RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 C21orf2O43822 256 aa9.6□□□□□ -0.87
PTPRD-204ENST00000397606 MSNP26038 577 aaKnown RBP9.6□□□□□ -0.87
PTPRD-204ENST00000397606 HOMER1Q86YM7 354 aa9.6□□□□□ -0.87
PTPRD-204ENST00000397606 DBNDD1Q9H9R9 158 aa9.6□□□□□ -0.87
PTPRD-204ENST00000397606 ZMYM1Q5SVZ6 1142 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 SP8Q8IXZ3 490 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 BTDP43251 543 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 DEFB132Q7Z7B7 95 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 IFNL3Q8IZI9 196 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 TM6SF1Q9BZW5 370 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 TAOK3Q9H2K8 898 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 ANGEL1Q9UNK9 670 aaKnown RBP9.59□□□□□ -0.87
PTPRD-204ENST00000397606 KRT18P05783 430 aaKnown RBP9.59□□□□□ -0.87
PTPRD-204ENST00000397606 HSPD1P10809 573 aaKnown RBP9.59□□□□□ -0.87
PTPRD-204ENST00000397606 APOBRQ0VD83 1088 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 RASGRF1Q13972 1273 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 R3HDM1Q15032 1099 aaKnown RBP9.59□□□□□ -0.87
PTPRD-204ENST00000397606 AKNAD1Q5T1N1 836 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 RAB34Q9BZG1 259 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 ATP8A2Q9NTI2 1148 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 RBM28Q9NW13 759 aaKnown RBP9.59□□□□□ -0.87
PTPRD-204ENST00000397606 ABCC6O95255 1503 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 USP17L12C9JPN9 530 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 USP17L21D6R901 530 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 SCNN1DP51172 638 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 WDR78Q5VTH9 848 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 CAVIN1Q6NZI2 390 aaKnown RBP9.59□□□□□ -0.87
PTPRD-204ENST00000397606 ALG1Q9BT22 464 aa9.59□□□□□ -0.87
PTPRD-204ENST00000397606 ZSCAN16Q9H4T2 348 aaPredicted RBP9.59□□□□□ -0.87
PTPRD-204ENST00000397606 ROBO1Q9Y6N7 1651 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 TPM1P09493 284 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 TCP10Q12799 353 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 GSE1Q14687 1217 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 PRDM1O75626 825 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 ADD2P35612 726 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 PPARAQ07869 468 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 PODNQ7Z5L7 613 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 INTS4Q96HW7 963 aaKnown RBP9.58□□□□□ -0.88
PTPRD-204ENST00000397606 ARHGEF10LQ9HCE6 1279 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 USP17L3A6NCW0 530 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 USP17L4A6NCW7 530 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 MCM4P33991 863 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 USP17L1Q7RTZ2 530 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 SEC62Q99442 399 aaKnown RBP9.58□□□□□ -0.88
PTPRD-204ENST00000397606 PICK1Q9NRD5 415 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 BMP2KQ9NSY1 1161 aaPredicted RBP9.58□□□□□ -0.88
PTPRD-204ENST00000397606 RIPOR2Q9Y4F9 1068 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 PCP11498 1178 aaKnown RBP9.58□□□□□ -0.88
PTPRD-204ENST00000397606 RAB3GAP1Q15042 981 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 PPP2R5BQ15173 497 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 PI4K2BQ8TCG2 481 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 ANTXR1Q9H6X2 564 aa9.58□□□□□ -0.88
PTPRD-204ENST00000397606 GYS1P13807 737 aa9.57□□□□□ -0.88
PTPRD-204ENST00000397606 TSR1Q2NL82 804 aaKnown RBP9.57□□□□□ -0.88
PTPRD-204ENST00000397606 RRP36Q96EU6 259 aaKnown RBP9.57□□□□□ -0.88
PTPRD-204ENST00000397606 ZKSCAN3Q9BRR0 538 aa9.57□□□□□ -0.88
PTPRD-204ENST00000397606 CTDSPL2Q05D32 466 aa9.57□□□□□ -0.88
PTPRD-204ENST00000397606 PI16Q6UXB8 463 aa9.57□□□□□ -0.88
PTPRD-204ENST00000397606 RGPD8O14715 1765 aaPredicted RBP9.57□□□□□ -0.88
PTPRD-204ENST00000397606 PSDA5PKW4 1024 aaPredicted RBP9.57□□□□□ -0.88
PTPRD-204ENST00000397606 E7EWF7 191 aa9.57□□□□□ -0.88
PTPRD-204ENST00000397606 PARP1P09874 1014 aaKnown RBP9.57□□□□□ -0.88
PTPRD-204ENST00000397606 CALML3P27482 149 aa9.57□□□□□ -0.88
PTPRD-204ENST00000397606 TMEM266Q2M3C6 531 aa9.57□□□□□ -0.88
PTPRD-204ENST00000397606 FGAP02671 866 aa9.57□□□□□ -0.88
PTPRD-204ENST00000397606 DEKP35659 375 aaKnown RBP9.56□□□□□ -0.88
PTPRD-204ENST00000397606 MCAMP43121 646 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 CIAPIN1Q6FI81 312 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 COL23A1Q86Y22 540 aaPredicted RBP9.56□□□□□ -0.88
PTPRD-204ENST00000397606 SDR42E1Q8WUS8 393 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 TNMDQ9H2S6 317 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 CD209Q9NNX6 404 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 PPFIA3O75145 1194 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 CPA1P15085 419 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 ATG9AQ7Z3C6 839 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 HEATR3Q7Z4Q2 680 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 MAP4K1Q92918 833 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 COL14A1Q05707 1796 aaKnown RBP9.56□□□□□ -0.88
PTPRD-204ENST00000397606 TFAP4Q01664 338 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 PTH1RQ03431 593 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 MPHOSPH6Q99547 160 aaKnown RBP9.56□□□□□ -0.88
PTPRD-204ENST00000397606 RGS12O14924 1447 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 ABCC12Q96J65 1359 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 UBN2Q6ZU65 1347 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 MYO3BQ8WXR4 1341 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 RAD17O75943 681 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 BAG4O95429 457 aaKnown RBP9.56□□□□□ -0.88
PTPRD-204ENST00000397606 NAPAP54920 295 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 DCAF15Q66K64 600 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 CEP57L1Q8IYX8 460 aa9.56□□□□□ -0.88
PTPRD-204ENST00000397606 PTPDC1A2A3K4 754 aa9.55□□□□□ -0.88
PTPRD-204ENST00000397606 BMP15O95972 392 aa9.55□□□□□ -0.88
PTPRD-204ENST00000397606 ZSCAN22P10073 491 aaPredicted RBP9.55□□□□□ -0.88
PTPRD-204ENST00000397606 SLC10A5Q5PT55 438 aa9.55□□□□□ -0.88
PTPRD-204ENST00000397606 USP48Q86UV5 1035 aa9.55□□□□□ -0.88
PTPRD-204ENST00000397606 C6orf50Q9HD87 102 aa9.55□□□□□ -0.88
PTPRD-204ENST00000397606 ATP6V0A2Q9Y487 856 aa9.55□□□□□ -0.88
PTPRD-204ENST00000397606 TOPAZ1Q8N9V7 1692 aa9.55□□□□□ -0.88
PTPRD-204ENST00000397606 GPSM2P81274 684 aa9.55□□□□□ -0.88
PTPRD-204ENST00000397606 SNAP23O00161 211 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms