RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 ANKRD13AQ8IZ07 590 aa11.09□□□□□ -0.63
CAPN3-208ENST00000397204 TDRD7Q8NHU6 1098 aaKnown RBP11.09□□□□□ -0.63
CAPN3-208ENST00000397204 VEZTQ9HBM0 779 aa11.09□□□□□ -0.63
CAPN3-208ENST00000397204 CNNM1Q9NRU3 951 aa11.09□□□□□ -0.63
CAPN3-208ENST00000397204 SERPINA10Q9UK55 444 aa11.09□□□□□ -0.63
CAPN3-208ENST00000397204 TRIM17Q9Y577 477 aa11.09□□□□□ -0.63
CAPN3-208ENST00000397204 PCDHAC2Q9Y5I4 1007 aa11.09□□□□□ -0.63
CAPN3-208ENST00000397204 F6X3S4 739 aa11.08□□□□□ -0.64
CAPN3-208ENST00000397204 GRM8O00222 908 aa11.08□□□□□ -0.64
CAPN3-208ENST00000397204 IGF2BP3O00425 579 aaKnown RBP eCLIP11.08□□□□□ -0.64
CAPN3-208ENST00000397204 PLIN1O60240 522 aa11.08□□□□□ -0.64
CAPN3-208ENST00000397204 ALDH1L1O75891 902 aa11.08□□□□□ -0.64
CAPN3-208ENST00000397204 HIBADHP31937 336 aaKnown RBP11.08□□□□□ -0.64
CAPN3-208ENST00000397204 EPHA10Q5JZY3 1008 aa11.08□□□□□ -0.64
CAPN3-208ENST00000397204 OTOP1Q7RTM1 612 aa11.08□□□□□ -0.64
CAPN3-208ENST00000397204 OXER1Q8TDS5 423 aa11.08□□□□□ -0.64
CAPN3-208ENST00000397204 ERO1AQ96HE7 468 aa11.08□□□□□ -0.64
CAPN3-208ENST00000397204 ZNF594Q96JF6 807 aaPredicted RBP11.08□□□□□ -0.64
CAPN3-208ENST00000397204 C9orf78Q9NZ63 289 aaPredicted RBP11.08□□□□□ -0.64
CAPN3-208ENST00000397204 ZNF316A6NFI3 1004 aaPredicted RBP11.07□□□□□ -0.64
CAPN3-208ENST00000397204 TBC1D12O60347 775 aa11.07□□□□□ -0.64
CAPN3-208ENST00000397204 ARHGEF6Q15052 776 aa11.07□□□□□ -0.64
CAPN3-208ENST00000397204 GCC1Q96CN9 775 aa11.07□□□□□ -0.64
CAPN3-208ENST00000397204 FAM84BQ96KN1 310 aaPredicted RBP11.07□□□□□ -0.64
CAPN3-208ENST00000397204 TSHZ2Q9NRE2 1034 aa11.07□□□□□ -0.64
CAPN3-208ENST00000397204 ZNF70Q9UC06 446 aaPredicted RBP11.07□□□□□ -0.64
CAPN3-208ENST00000397204 PTPN22Q9Y2R2 807 aa11.07□□□□□ -0.64
CAPN3-208ENST00000397204 KIAA0100Q14667 2235 aaKnown RBP11.07□□□□□ -0.64
CAPN3-208ENST00000397204 MYH3P11055 1940 aa11.06□□□□□ -0.64
CAPN3-208ENST00000397204 SP3Q02447 781 aa11.06□□□□□ -0.64
CAPN3-208ENST00000397204 CRHR2Q13324 411 aa11.06□□□□□ -0.64
CAPN3-208ENST00000397204 MFSD14BQ5SR56 506 aa11.06□□□□□ -0.64
CAPN3-208ENST00000397204 DZIP1LQ8IYY4 767 aaKnown RBP11.06□□□□□ -0.64
CAPN3-208ENST00000397204 PTPN18Q99952 460 aa11.06□□□□□ -0.64
CAPN3-208ENST00000397204 EFCC1Q9HA90 598 aa11.06□□□□□ -0.64
CAPN3-208ENST00000397204 MRS2Q9HD23 443 aa11.06□□□□□ -0.64
CAPN3-208ENST00000397204 TTF2Q9UNY4 1162 aaKnown RBP11.06□□□□□ -0.64
CAPN3-208ENST00000397204 LHX6Q9UPM6 363 aa11.06□□□□□ -0.64
CAPN3-208ENST00000397204 JAG2Q9Y219 1238 aa11.06□□□□□ -0.64
CAPN3-208ENST00000397204 SALL2Q9Y467 1007 aaPredicted RBP11.06□□□□□ -0.64
CAPN3-208ENST00000397204 GJA5P36382 358 aa11.05□□□□□ -0.64
CAPN3-208ENST00000397204 TNNI2P48788 182 aa11.05□□□□□ -0.64
CAPN3-208ENST00000397204 MAP3K9P80192 1104 aa11.05□□□□□ -0.64
CAPN3-208ENST00000397204 HDLBPQ00341 1268 aaKnown RBP11.05□□□□□ -0.64
CAPN3-208ENST00000397204 FBXO33Q7Z6M2 555 aa11.05□□□□□ -0.64
CAPN3-208ENST00000397204 MRIQ9BWK5 157 aa11.05□□□□□ -0.64
CAPN3-208ENST00000397204 SRCIN1Q9C0H9 1055 aa11.05□□□□□ -0.64
CAPN3-208ENST00000397204 TDRD3Q9H7E2 651 aaKnown RBP11.05□□□□□ -0.64
CAPN3-208ENST00000397204 RIPOR2Q9Y4F9 1068 aa11.05□□□□□ -0.64
CAPN3-208ENST00000397204 AOX1Q06278 1338 aa11.05□□□□□ -0.64
CAPN3-208ENST00000397204 MROH5Q6ZUA9 1318 aa11.05□□□□□ -0.64
CAPN3-208ENST00000397204 SSC5DA1L4H1 1573 aa11.04□□□□□ -0.64
CAPN3-208ENST00000397204 CRKP46108 304 aa11.04□□□□□ -0.64
CAPN3-208ENST00000397204 GYG1P46976 350 aa11.04□□□□□ -0.64
CAPN3-208ENST00000397204 GTF2A2P52657 109 aa11.04□□□□□ -0.64
CAPN3-208ENST00000397204 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.04□□□□□ -0.64
CAPN3-208ENST00000397204 CD99L2Q8TCZ2 262 aa11.04□□□□□ -0.64
CAPN3-208ENST00000397204 ARMC5Q96C12 935 aa11.04□□□□□ -0.64
CAPN3-208ENST00000397204 OPTNQ96CV9 577 aa11.04□□□□□ -0.64
CAPN3-208ENST00000397204 TEPSINQ96N21 525 aa11.04□□□□□ -0.64
CAPN3-208ENST00000397204 PUS3Q9BZE2 481 aaKnown RBP11.04□□□□□ -0.64
CAPN3-208ENST00000397204 ELP3Q9H9T3 547 aa11.04□□□□□ -0.64
CAPN3-208ENST00000397204 EMILIN3Q9NT22 766 aa11.04□□□□□ -0.64
CAPN3-208ENST00000397204 WDHD1O75717 1129 aaPredicted RBP11.03□□□□□ -0.64
CAPN3-208ENST00000397204 PLCB2Q00722 1185 aa11.03□□□□□ -0.64
CAPN3-208ENST00000397204 CAVIN4Q5BKX8 364 aa11.03□□□□□ -0.64
CAPN3-208ENST00000397204 SLC4A10Q6U841 1118 aa11.03□□□□□ -0.64
CAPN3-208ENST00000397204 NBPF11Q86T75 865 aa11.03□□□□□ -0.64
CAPN3-208ENST00000397204 VPS37DQ86XT2 251 aa11.03□□□□□ -0.64
CAPN3-208ENST00000397204 TBC1D22AQ8WUA7 517 aa11.03□□□□□ -0.64
CAPN3-208ENST00000397204 KAZALD1Q96I82 304 aa11.03□□□□□ -0.64
CAPN3-208ENST00000397204 ZFYVE28Q9HCC9 887 aa11.03□□□□□ -0.64
CAPN3-208ENST00000397204 CSADQ9Y600 493 aa11.03□□□□□ -0.64
CAPN3-208ENST00000397204 UTYO14607 1347 aa11.03□□□□□ -0.64
CAPN3-208ENST00000397204 BRCA2P51587 3418 aa11.03□□□□□ -0.64
CAPN3-208ENST00000397204 ZNF646O15015 1829 aaPredicted RBP11.02□□□□□ -0.64
CAPN3-208ENST00000397204 CCL15-CCL14A0A0B4J2E2 113 aa11.02□□□□□ -0.65
CAPN3-208ENST00000397204 TCP10L2B9ZVM9 353 aa11.02□□□□□ -0.65
CAPN3-208ENST00000397204 FRAT2O75474 233 aaPredicted RBP11.02□□□□□ -0.65
CAPN3-208ENST00000397204 CCL15Q16663 113 aa11.02□□□□□ -0.65
CAPN3-208ENST00000397204 FKBP1CQ5VVH2 108 aa11.02□□□□□ -0.65
CAPN3-208ENST00000397204 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.02□□□□□ -0.65
CAPN3-208ENST00000397204 BRI3BPQ8WY22 251 aa11.02□□□□□ -0.65
CAPN3-208ENST00000397204 HOOK2Q96ED9 719 aa11.02□□□□□ -0.65
CAPN3-208ENST00000397204 SUCLG2Q96I99 432 aa11.02□□□□□ -0.65
CAPN3-208ENST00000397204 TMEM39BQ9GZU3 492 aa11.02□□□□□ -0.65
CAPN3-208ENST00000397204 SUGT1Q9Y2Z0 365 aa11.02□□□□□ -0.65
CAPN3-208ENST00000397204 CACNA1FO60840 1977 aa11.02□□□□□ -0.65
CAPN3-208ENST00000397204 ANP32CO43423 234 aa11.01□□□□□ -0.65
CAPN3-208ENST00000397204 PDE8BO95263 885 aa11.01□□□□□ -0.65
CAPN3-208ENST00000397204 NBPF7P0C2Y1 421 aaPredicted RBP11.01□□□□□ -0.65
CAPN3-208ENST00000397204 VGLL4Q14135 290 aa11.01□□□□□ -0.65
CAPN3-208ENST00000397204 TAF1CQ15572 869 aaPredicted RBP11.01□□□□□ -0.65
CAPN3-208ENST00000397204 RABL6Q3YEC7 729 aaPredicted RBP11.01□□□□□ -0.65
CAPN3-208ENST00000397204 FAM83AQ86UY5 434 aa11.01□□□□□ -0.65
CAPN3-208ENST00000397204 ERO1BQ86YB8 467 aa11.01□□□□□ -0.65
CAPN3-208ENST00000397204 TEKT1Q969V4 418 aa11.01□□□□□ -0.65
CAPN3-208ENST00000397204 ZCCHC17Q9NP64 241 aaKnown RBP11.01□□□□□ -0.65
CAPN3-208ENST00000397204 CEP290O15078 2479 aa11.01□□□□□ -0.65
CAPN3-208ENST00000397204 SPEF2Q9C093 1822 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms