RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 TRMT112Q9UI30 125 aaKnown RBP16.18■□□□□ 0.18
RTF1-201ENST00000389629 NEURL1BA8MQ27 555 aa16.18■□□□□ 0.18
RTF1-201ENST00000389629 GCP02774 474 aa16.18■□□□□ 0.18
RTF1-201ENST00000389629 KCNA6P17658 529 aa16.18■□□□□ 0.18
RTF1-201ENST00000389629 KDRP35968 1356 aa16.18■□□□□ 0.18
RTF1-201ENST00000389629 NSUN7Q8NE18 718 aaKnown RBP16.18■□□□□ 0.18
RTF1-201ENST00000389629 PLEKHA4Q9H4M7 779 aa16.18■□□□□ 0.18
RTF1-201ENST00000389629 MYO1BO43795 1136 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 KRT18P05783 430 aaKnown RBP16.17■□□□□ 0.18
RTF1-201ENST00000389629 ADCY9O60503 1353 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 PLA2G4DQ86XP0 818 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 ALS2CR12Q96Q35 445 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 VPS16Q9H269 839 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 EPC1Q9H2F5 836 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 DBNLQ9UJU6 430 aaKnown RBP16.17■□□□□ 0.18
RTF1-201ENST00000389629 RCOR1Q9UKL0 485 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 NLRP5P59047 1200 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 FANCLQ9NW38 375 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 B4E1Z4 1266 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 NDUFAB1O14561 156 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 INPP5BP32019 993 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 CCDC122Q5T0U0 273 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 EHBP1Q8NDI1 1231 aa16.17■□□□□ 0.18
RTF1-201ENST00000389629 POLR2DO15514 142 aaKnown RBP16.16■□□□□ 0.18
RTF1-201ENST00000389629 OPA1O60313 960 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 SASH1O94885 1247 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 TOB2Q14106 344 aaPredicted RBP16.16■□□□□ 0.18
RTF1-201ENST00000389629 LONRF2Q1L5Z9 754 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 HINFPQ9BQA5 517 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 MYL10Q9BUA6 226 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 PRAMEF22A3QJZ6 481 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 LIG3P49916 1009 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.16■□□□□ 0.18
RTF1-201ENST00000389629 GOLGA6CA6NDK9 693 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 GOLGA6DP0CG33 693 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 UBXN1Q04323 297 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 RAD51AP2Q09MP3 1159 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 KRT40Q6A162 431 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 CTCFLQ8NI51 663 aaPredicted RBP16.16■□□□□ 0.18
RTF1-201ENST00000389629 SCLT1Q96NL6 688 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 RNF41Q9H4P4 317 aaPredicted RBP16.16■□□□□ 0.18
RTF1-201ENST00000389629 GOLGA6AQ9NYA3 693 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 PDIA3P30101 505 aaKnown RBP16.16■□□□□ 0.18
RTF1-201ENST00000389629 CYLC1P35663 651 aaPredicted RBP16.16■□□□□ 0.18
RTF1-201ENST00000389629 BRD3Q15059 726 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 DYDC1Q8WWB3 177 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 GOPCQ9HD26 462 aa16.16■□□□□ 0.18
RTF1-201ENST00000389629 REREQ9P2R6 1566 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 MACROD2A1Z1Q3 448 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 CNGA4Q8IV77 575 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 IFT81Q8WYA0 676 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 DSCC1Q9BVC3 393 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 MLH3Q9UHC1 1453 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 MYO1CO00159 1063 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 EYA2O00167 538 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 SPECC1LQ69YQ0 1117 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 ZNF274Q96GC6 653 aaPredicted RBP16.15■□□□□ 0.18
RTF1-201ENST00000389629 ZKSCAN3Q9BRR0 538 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 KRT86O43790 486 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 STARD3NLO95772 234 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 TUBBP07437 444 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 HSPD1P10809 573 aaKnown RBP16.15■□□□□ 0.18
RTF1-201ENST00000389629 TUBB4BP68371 445 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 E2F4Q16254 413 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 ZNF827Q17R98 1081 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 CATIPQ7Z7H3 387 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 IQCA1Q86XH1 822 aa16.15■□□□□ 0.18
RTF1-201ENST00000389629 MKRN1Q9UHC7 482 aaKnown RBP16.15■□□□□ 0.18
RTF1-201ENST00000389629 TRIM75PA6NK02 468 aa16.14■□□□□ 0.18
RTF1-201ENST00000389629 ACTN2P35609 894 aa16.14■□□□□ 0.17
RTF1-201ENST00000389629 CCDC114Q96M63 670 aa16.14■□□□□ 0.17
RTF1-201ENST00000389629 SLF1Q9BQI6 1058 aa16.14■□□□□ 0.17
RTF1-201ENST00000389629 SEPT11Q9NVA2 429 aaKnown RBP16.14■□□□□ 0.17
RTF1-201ENST00000389629 ZFYVE27Q5T4F4 411 aa16.14■□□□□ 0.17
RTF1-201ENST00000389629 KLHL34Q8N239 644 aa16.14■□□□□ 0.17
RTF1-201ENST00000389629 PARD6BQ9BYG5 372 aa16.14■□□□□ 0.17
RTF1-201ENST00000389629 ANGEL1Q9UNK9 670 aaKnown RBP16.14■□□□□ 0.17
RTF1-201ENST00000389629 MAPK8IP1Q9UQF2 711 aa16.14■□□□□ 0.17
RTF1-201ENST00000389629 KIF5AQ12840 1032 aa16.14■□□□□ 0.17
RTF1-201ENST00000389629 SIRT1Q96EB6 747 aa16.14■□□□□ 0.17
RTF1-201ENST00000389629 FAN1Q9Y2M0 1017 aa16.14■□□□□ 0.17
RTF1-201ENST00000389629 SLC5A1P13866 664 aa16.13■□□□□ 0.17
RTF1-201ENST00000389629 MAP2K1Q02750 393 aaPredicted RBP16.13■□□□□ 0.17
RTF1-201ENST00000389629 NAA15Q9BXJ9 866 aaKnown RBP16.13■□□□□ 0.17
RTF1-201ENST00000389629 GPAA1O43292 621 aa16.13■□□□□ 0.17
RTF1-201ENST00000389629 CABP5Q9NP86 173 aa16.13■□□□□ 0.17
RTF1-201ENST00000389629 SPAG1Q07617 926 aa16.13■□□□□ 0.17
RTF1-201ENST00000389629 ZNF496Q96IT1 587 aaPredicted RBP16.13■□□□□ 0.17
RTF1-201ENST00000389629 HAUS7Q99871 368 aa16.13■□□□□ 0.17
RTF1-201ENST00000389629 LUC7L2Q9Y383 392 aaKnown RBP16.13■□□□□ 0.17
RTF1-201ENST00000389629 KIAA1210Q9ULL0 1709 aa16.13■□□□□ 0.17
RTF1-201ENST00000389629 CUTAO60888 179 aa16.13■□□□□ 0.17
RTF1-201ENST00000389629 IGHMBP2P38935 993 aaKnown RBP16.13■□□□□ 0.17
RTF1-201ENST00000389629 TMOD3Q9NYL9 352 aa16.13■□□□□ 0.17
RTF1-201ENST00000389629 RTEL1Q9NZ71 1219 aa16.13■□□□□ 0.17
RTF1-201ENST00000389629 CLIC6Q96NY7 704 aa16.12■□□□□ 0.17
RTF1-201ENST00000389629 KRT23Q9C075 422 aa16.12■□□□□ 0.17
RTF1-201ENST00000389629 TMCO5BA8MYB1 307 aa16.12■□□□□ 0.17
RTF1-201ENST00000389629 CCDC121Q6ZUS5 278 aa16.12■□□□□ 0.17
RTF1-201ENST00000389629 GPIHBP1Q8IV16 184 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms