RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 PRC1O43663 620 aa25.25■■□□□ 1.63
TRIM54-202ENST00000380075 HAND2P61296 217 aa25.25■■□□□ 1.63
TRIM54-202ENST00000380075 TRDNQ13061 729 aa25.25■■□□□ 1.63
TRIM54-202ENST00000380075 RGS22Q8NE09 1264 aa25.25■■□□□ 1.63
TRIM54-202ENST00000380075 CCT2P78371 535 aaKnown RBP25.24■■□□□ 1.63
TRIM54-202ENST00000380075 SF3B3Q15393 1217 aaKnown RBP25.24■■□□□ 1.63
TRIM54-202ENST00000380075 SPATA5Q8NB90 893 aa25.24■■□□□ 1.63
TRIM54-202ENST00000380075 CCDC39Q9UFE4 941 aa25.24■■□□□ 1.63
TRIM54-202ENST00000380075 WWC3Q9ULE0 1092 aa25.24■■□□□ 1.63
TRIM54-202ENST00000380075 ZNF532Q9HCE3 1301 aa25.24■■□□□ 1.63
TRIM54-202ENST00000380075 MSNP26038 577 aaKnown RBP25.24■■□□□ 1.63
TRIM54-202ENST00000380075 ALX1Q15699 326 aa25.24■■□□□ 1.63
TRIM54-202ENST00000380075 ZNF622Q969S3 477 aaKnown RBP eCLIP25.24■■□□□ 1.63
TRIM54-202ENST00000380075 NUP62CLQ9H1M0 184 aa25.24■■□□□ 1.63
TRIM54-202ENST00000380075 TCRBV5S4A2TA0A5A2 114 aa25.23■■□□□ 1.63
TRIM54-202ENST00000380075 MAP3K12Q12852 859 aa25.23■■□□□ 1.63
TRIM54-202ENST00000380075 TFIP11Q9UBB9 837 aaKnown RBP25.23■■□□□ 1.63
TRIM54-202ENST00000380075 NOL7Q9UMY1 257 aaKnown RBP25.23■■□□□ 1.63
TRIM54-202ENST00000380075 CCDC192P0DO97 292 aa25.22■■□□□ 1.63
TRIM54-202ENST00000380075 CHST3Q7LGC8 479 aa25.22■■□□□ 1.63
TRIM54-202ENST00000380075 RPGRQ92834 1020 aaKnown RBP25.22■■□□□ 1.63
TRIM54-202ENST00000380075 MASTLQ96GX5 879 aa25.22■■□□□ 1.63
TRIM54-202ENST00000380075 NAP1L2Q9ULW6 460 aaPredicted RBP25.22■■□□□ 1.63
TRIM54-202ENST00000380075 UTRNP46939 3433 aa25.22■■□□□ 1.63
TRIM54-202ENST00000380075 NPR1P16066 1061 aa25.22■■□□□ 1.63
TRIM54-202ENST00000380075 GIMAP6Q6P9H5 292 aa25.22■■□□□ 1.63
TRIM54-202ENST00000380075 MAP3K11Q16584 847 aa25.21■■□□□ 1.63
TRIM54-202ENST00000380075 HELBQ8NG08 1087 aaPredicted RBP25.21■■□□□ 1.63
TRIM54-202ENST00000380075 ZNF396Q96N95 335 aaPredicted RBP25.21■■□□□ 1.63
TRIM54-202ENST00000380075 CDC5LQ99459 802 aaKnown RBP25.21■■□□□ 1.63
TRIM54-202ENST00000380075 NCOA5Q9HCD5 579 aaKnown RBP25.21■■□□□ 1.63
TRIM54-202ENST00000380075 DOCK2Q92608 1830 aa25.21■■□□□ 1.63
TRIM54-202ENST00000380075 TPRNQ4KMQ1 711 aa25.2■■□□□ 1.63
TRIM54-202ENST00000380075 AIDAQ96BJ3 306 aa25.2■■□□□ 1.63
TRIM54-202ENST00000380075 SEC31BQ9NQW1 1179 aa25.2■■□□□ 1.63
TRIM54-202ENST00000380075 HOXA10P31260 410 aaPredicted RBP25.2■■□□□ 1.62
TRIM54-202ENST00000380075 ANTXR2P58335 489 aa25.2■■□□□ 1.62
TRIM54-202ENST00000380075 STRBPQ96SI9 672 aaKnown RBP25.2■■□□□ 1.62
TRIM54-202ENST00000380075 KIAA1551Q9HCM1 1747 aa25.19■■□□□ 1.62
TRIM54-202ENST00000380075 KLF18A0A0U1RQI7 1052 aa25.19■■□□□ 1.62
TRIM54-202ENST00000380075 LIG1P18858 919 aa25.19■■□□□ 1.62
TRIM54-202ENST00000380075 RASGRF1Q13972 1273 aa25.19■■□□□ 1.62
TRIM54-202ENST00000380075 STYK1Q6J9G0 422 aa25.19■■□□□ 1.62
TRIM54-202ENST00000380075 PIM2Q9P1W9 311 aa25.19■■□□□ 1.62
TRIM54-202ENST00000380075 COL11A2P13942 1736 aaPredicted RBP25.18■■□□□ 1.62
TRIM54-202ENST00000380075 RBM17Q96I25 401 aaKnown RBP25.18■■□□□ 1.62
TRIM54-202ENST00000380075 RCOR1Q9UKL0 485 aa25.18■■□□□ 1.62
TRIM54-202ENST00000380075 GOLGA8BA8MQT2 603 aa25.18■■□□□ 1.62
TRIM54-202ENST00000380075 RBM43Q6ZSC3 357 aaKnown RBP25.18■■□□□ 1.62
TRIM54-202ENST00000380075 MYH15Q9Y2K3 1946 aa25.17■■□□□ 1.62
TRIM54-202ENST00000380075 PATL2C9JE40 543 aaKnown RBP25.17■■□□□ 1.62
TRIM54-202ENST00000380075 APPP05067 770 aa25.17■■□□□ 1.62
TRIM54-202ENST00000380075 ADD1P35611 737 aaKnown RBP25.17■■□□□ 1.62
TRIM54-202ENST00000380075 BICD2Q8TD16 824 aa25.17■■□□□ 1.62
TRIM54-202ENST00000380075 TNMDQ9H2S6 317 aa25.17■■□□□ 1.62
TRIM54-202ENST00000380075 CLSTN2Q9H4D0 955 aa25.17■■□□□ 1.62
TRIM54-202ENST00000380075 DACT1Q9NYF0 836 aa25.17■■□□□ 1.62
TRIM54-202ENST00000380075 ANGEL1Q9UNK9 670 aaKnown RBP25.17■■□□□ 1.62
TRIM54-202ENST00000380075 GNAT2P19087 354 aa25.16■■□□□ 1.62
TRIM54-202ENST00000380075 PGBD1Q96JS3 809 aa25.16■■□□□ 1.62
TRIM54-202ENST00000380075 TMEM87BQ96K49 555 aa25.16■■□□□ 1.62
TRIM54-202ENST00000380075 NBPF3Q9H094 633 aa25.16■■□□□ 1.62
TRIM54-202ENST00000380075 HPS5Q9UPZ3 1129 aa25.16■■□□□ 1.62
TRIM54-202ENST00000380075 CRAMP1Q96RY5 1269 aa25.16■■□□□ 1.62
TRIM54-202ENST00000380075 CPLX1O14810 134 aa25.15■■□□□ 1.62
TRIM54-202ENST00000380075 FDPSP14324 419 aaKnown RBP25.15■■□□□ 1.62
TRIM54-202ENST00000380075 CHRNDQ07001 517 aa25.15■■□□□ 1.62
TRIM54-202ENST00000380075 TBC1D10CQ8IV04 446 aa25.15■■□□□ 1.62
TRIM54-202ENST00000380075 TTLL6Q8N841 843 aa25.15■■□□□ 1.62
TRIM54-202ENST00000380075 CNKSR1Q969H4 720 aa25.15■■□□□ 1.62
TRIM54-202ENST00000380075 GPHNQ9NQX3 736 aaPredicted RBP25.15■■□□□ 1.62
TRIM54-202ENST00000380075 ZKSCAN5Q9Y2L8 839 aa25.15■■□□□ 1.62
TRIM54-202ENST00000380075 ALDH1B1P30837 517 aa25.14■■□□□ 1.62
TRIM54-202ENST00000380075 MAGEB6Q8N7X4 407 aa25.14■■□□□ 1.62
TRIM54-202ENST00000380075 CELF1Q92879 486 aaKnown RBP25.14■■□□□ 1.62
TRIM54-202ENST00000380075 KDM4AO75164 1064 aa25.13■■□□□ 1.61
TRIM54-202ENST00000380075 DALRD3Q5D0E6 543 aaKnown RBP25.13■■□□□ 1.61
TRIM54-202ENST00000380075 CNNM2Q9H8M5 875 aa25.13■■□□□ 1.61
TRIM54-202ENST00000380075 BCS1LQ9Y276 419 aa25.13■■□□□ 1.61
TRIM54-202ENST00000380075 MYO5AQ9Y4I1 1855 aaKnown RBP25.13■■□□□ 1.61
TRIM54-202ENST00000380075 SH2B2O14492 632 aaPredicted RBP25.13■■□□□ 1.61
TRIM54-202ENST00000380075 ZNF500O60304 480 aaPredicted RBP25.13■■□□□ 1.61
TRIM54-202ENST00000380075 CDKL5O76039 1030 aa25.13■■□□□ 1.61
TRIM54-202ENST00000380075 GRAPQ13588 217 aa25.13■■□□□ 1.61
TRIM54-202ENST00000380075 ANKRD18AQ8IVF6 992 aa25.13■■□□□ 1.61
TRIM54-202ENST00000380075 GRAPLQ8TC17 118 aaPredicted RBP25.13■■□□□ 1.61
TRIM54-202ENST00000380075 C8orf76Q96K31 380 aa25.13■■□□□ 1.61
TRIM54-202ENST00000380075 NAPBQ9H115 298 aa25.13■■□□□ 1.61
TRIM54-202ENST00000380075 ORC3Q9UBD5 711 aaPredicted RBP25.13■■□□□ 1.61
TRIM54-202ENST00000380075 MBD4O95243 580 aa25.12■■□□□ 1.61
TRIM54-202ENST00000380075 SLC51AQ86UW1 340 aa25.12■■□□□ 1.61
TRIM54-202ENST00000380075 IFNL3Q8IZI9 196 aa25.12■■□□□ 1.61
TRIM54-202ENST00000380075 FAM200AQ8TCP9 573 aa25.12■■□□□ 1.61
TRIM54-202ENST00000380075 NACAP1Q9BZK3 213 aa25.12■■□□□ 1.61
TRIM54-202ENST00000380075 ZNF219Q9P2Y4 722 aaPredicted RBP25.12■■□□□ 1.61
TRIM54-202ENST00000380075 USP25Q9UHP3 1055 aa25.12■■□□□ 1.61
TRIM54-202ENST00000380075 TIAM2Q8IVF5 1701 aa25.12■■□□□ 1.61
TRIM54-202ENST00000380075 COL4A1P02462 1669 aa25.12■■□□□ 1.61
TRIM54-202ENST00000380075 UBE4AQ14139 1066 aa25.11■■□□□ 1.61
TRIM54-202ENST00000380075 CPLX2Q6PUV4 134 aaKnown RBP25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms