RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 SPAG1Q07617 926 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 SMARCC2Q8TAQ2 1214 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 LLPHQ9BRT6 129 aaKnown RBP17.05■□□□□ 0.32
NPHP4-201ENST00000378156 WWC3Q9ULE0 1092 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 TPCN1Q9ULQ1 816 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 ATL3Q6DD88 541 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.05■□□□□ 0.32
NPHP4-201ENST00000378156 SEC62Q99442 399 aaKnown RBP17.04■□□□□ 0.32
NPHP4-201ENST00000378156 MTMR6Q9Y217 621 aa17.04■□□□□ 0.32
NPHP4-201ENST00000378156 NLRP1Q9C000 1473 aa17.04■□□□□ 0.32
NPHP4-201ENST00000378156 CCDC91Q7Z6B0 441 aa17.04■□□□□ 0.32
NPHP4-201ENST00000378156 PPP1R9BQ96SB3 815 aa17.04■□□□□ 0.32
NPHP4-201ENST00000378156 DNA2P51530 1060 aa17.04■□□□□ 0.32
NPHP4-201ENST00000378156 ANGEL1Q9UNK9 670 aaKnown RBP17.04■□□□□ 0.32
NPHP4-201ENST00000378156 CHD1O14646 1710 aa17.04■□□□□ 0.32
NPHP4-201ENST00000378156 PSMA7O14818 248 aa17.04■□□□□ 0.32
NPHP4-201ENST00000378156 POLD1P28340 1107 aa17.04■□□□□ 0.32
NPHP4-201ENST00000378156 ADCK5Q3MIX3 580 aa17.04■□□□□ 0.32
NPHP4-201ENST00000378156 LSG1Q9H089 658 aaKnown RBP17.04■□□□□ 0.32
NPHP4-201ENST00000378156 ERBB4Q15303 1308 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 SMC1AQ14683 1233 aaKnown RBP17.03■□□□□ 0.32
NPHP4-201ENST00000378156 ZSWIM6Q9HCJ5 1215 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 RBM28Q9NW13 759 aaKnown RBP17.03■□□□□ 0.32
NPHP4-201ENST00000378156 GGA1Q9UJY5 639 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 USP21Q9UK80 565 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 KDRP35968 1356 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 MROH5Q6ZUA9 1318 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 CROCC2H7BZ55 1655 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 TUBB4AP04350 444 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 TNNI2P48788 182 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 ASIC1P78348 528 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 WDR66Q8TBY9 1149 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 ABCC3O15438 1527 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 ZAP70P43403 619 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 STX17P56962 302 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 TTLL7Q6ZT98 887 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 NAA15Q9BXJ9 866 aaKnown RBP17.03■□□□□ 0.32
NPHP4-201ENST00000378156 RGS12O14924 1447 aa17.03■□□□□ 0.32
NPHP4-201ENST00000378156 SPDYE3A6NKU9 549 aa17.02■□□□□ 0.32
NPHP4-201ENST00000378156 CTAGE1Q96RT6 745 aa17.02■□□□□ 0.32
NPHP4-201ENST00000378156 USP6P35125 1406 aa17.02■□□□□ 0.32
NPHP4-201ENST00000378156 PTCH1Q13635 1447 aa17.02■□□□□ 0.32
NPHP4-201ENST00000378156 GOLGA6L10A0A0M3HER8 536 aa17.02■□□□□ 0.32
NPHP4-201ENST00000378156 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.02■□□□□ 0.327e-12■■■■□ 24.5
NPHP4-201ENST00000378156 SLU7O95391 586 aaKnown RBP17.02■□□□□ 0.32
NPHP4-201ENST00000378156 KRT79Q5XKE5 535 aa17.02■□□□□ 0.32
NPHP4-201ENST00000378156 RBM26Q5T8P6 1007 aaKnown RBP17.02■□□□□ 0.31
NPHP4-201ENST00000378156 CCDC24Q8N4L8 307 aa17.02■□□□□ 0.31
NPHP4-201ENST00000378156 RNF187Q5TA31 235 aaPredicted RBP17.01■□□□□ 0.31
NPHP4-201ENST00000378156 GTPBP4Q9BZE4 634 aaKnown RBP17.01■□□□□ 0.31
NPHP4-201ENST00000378156 DNAI2Q9GZS0 605 aa17.01■□□□□ 0.31
NPHP4-201ENST00000378156 MADDQ8WXG6 1647 aa17.01■□□□□ 0.31
NPHP4-201ENST00000378156 ZNF75DP51815 510 aa17.01■□□□□ 0.31
NPHP4-201ENST00000378156 IFFO1Q0D2I5 559 aa17.01■□□□□ 0.31
NPHP4-201ENST00000378156 ANO1Q5XXA6 986 aa17.01■□□□□ 0.31
NPHP4-201ENST00000378156 SPATA5Q8NB90 893 aa17.01■□□□□ 0.31
NPHP4-201ENST00000378156 GTF3C6Q969F1 213 aa17.01■□□□□ 0.31
NPHP4-201ENST00000378156 CDK12Q9NYV4 1490 aaPredicted RBP17.01■□□□□ 0.31
NPHP4-201ENST00000378156 GCOM1H8Y6P7 765 aaPredicted RBP17.01■□□□□ 0.31
NPHP4-201ENST00000378156 IVLP07476 585 aa17.01■□□□□ 0.31
NPHP4-201ENST00000378156 MYZAPP0CAP1 466 aa17.01■□□□□ 0.31
NPHP4-201ENST00000378156 LMAN1P49257 510 aa17.01■□□□□ 0.31
NPHP4-201ENST00000378156 NPHP4O75161 1426 aaPredicted RBP17.01■□□□□ 0.31
NPHP4-201ENST00000378156 AKR1B10O60218 316 aa17■□□□□ 0.31
NPHP4-201ENST00000378156 PRDM1O75626 825 aa17■□□□□ 0.31
NPHP4-201ENST00000378156 CCDC175P0C221 793 aa17■□□□□ 0.31
NPHP4-201ENST00000378156 SYT10Q6XYQ8 523 aa17■□□□□ 0.31
NPHP4-201ENST00000378156 MCM7P33993 719 aa17■□□□□ 0.31
NPHP4-201ENST00000378156 TRERF1Q96PN7 1200 aa17■□□□□ 0.31
NPHP4-201ENST00000378156 E7EWF7 191 aa17■□□□□ 0.31
NPHP4-201ENST00000378156 PARP1P09874 1014 aaKnown RBP17■□□□□ 0.31
NPHP4-201ENST00000378156 CTR9Q6PD62 1173 aa17■□□□□ 0.31
NPHP4-201ENST00000378156 DTHD1Q6ZMT9 781 aa17■□□□□ 0.31
NPHP4-201ENST00000378156 KRI1Q8N9T8 703 aaKnown RBP17■□□□□ 0.31
NPHP4-201ENST00000378156 MPHOSPH6Q99547 160 aaKnown RBP17■□□□□ 0.31
NPHP4-201ENST00000378156 SAP30BPQ9UHR5 308 aaKnown RBP17■□□□□ 0.31
NPHP4-201ENST00000378156 PRAMEF22A3QJZ6 481 aa17■□□□□ 0.31
NPHP4-201ENST00000378156 RPS8P62241 208 aaKnown RBP17■□□□□ 0.31
NPHP4-201ENST00000378156 TLR7Q9NYK1 1049 aaKnown RBP17■□□□□ 0.31
NPHP4-201ENST00000378156 STK32BQ9NY57 414 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 MYL5Q02045 173 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 RILPL1Q5EBL4 403 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 IQUBQ8NA54 791 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 MYL10Q9BUA6 226 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.99■□□□□ 0.31
NPHP4-201ENST00000378156 HECW2Q9P2P5 1572 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 ELP1O95163 1332 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 ZNF532Q9HCE3 1301 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 DEXIO95424 95 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 CTSWP56202 376 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 ALS2CR12Q96Q35 445 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 SPAG5Q96R06 1193 aa16.99■□□□□ 0.31
NPHP4-201ENST00000378156 PAXIP1Q6ZW49 1069 aaPredicted RBP16.99■□□□□ 0.31
NPHP4-201ENST00000378156 RNF216Q9NWF9 866 aaPredicted RBP16.99■□□□□ 0.31
NPHP4-201ENST00000378156 CUL4AQ13619 759 aa16.98■□□□□ 0.31
NPHP4-201ENST00000378156 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.98■□□□□ 0.31
NPHP4-201ENST00000378156 CARD10Q9BWT7 1032 aa16.98■□□□□ 0.31
NPHP4-201ENST00000378156 CCDC174Q6PII3 467 aa16.98■□□□□ 0.31
NPHP4-201ENST00000378156 PHKBQ93100 1093 aa16.98■□□□□ 0.31
NPHP4-201ENST00000378156 AATFQ9NY61 560 aaKnown RBP eCLIP16.98■□□□□ 0.311e-7■■■■■ 28.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms