RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 WDR33Q9C0J8 1336 aaKnown RBP14.95□□□□□ -0.02
VRK3-202ENST00000377011 MYH2Q9UKX2 1941 aa14.95□□□□□ -0.02
VRK3-202ENST00000377011 TCP10L2B9ZVM9 353 aa14.95□□□□□ -0.02
VRK3-202ENST00000377011 ARID4AP29374 1257 aaPredicted RBP14.95□□□□□ -0.02
VRK3-202ENST00000377011 HUNKP57058 714 aa14.95□□□□□ -0.02
VRK3-202ENST00000377011 NBPF12Q5TAG4 269 aaPredicted RBP14.95□□□□□ -0.02
VRK3-202ENST00000377011 PAXIP1Q6ZW49 1069 aaPredicted RBP14.95□□□□□ -0.02
VRK3-202ENST00000377011 WDR66Q8TBY9 1149 aa14.95□□□□□ -0.02
VRK3-202ENST00000377011 RHPN1Q8TCX5 695 aa14.95□□□□□ -0.02
VRK3-202ENST00000377011 CAPNS2Q96L46 248 aa14.95□□□□□ -0.02
VRK3-202ENST00000377011 DENND2AQ9ULE3 1009 aa14.95□□□□□ -0.02
VRK3-202ENST00000377011 DAGLAQ9Y4D2 1042 aa14.95□□□□□ -0.02
VRK3-202ENST00000377011 UBE2Q2LH0YL09 131 aa14.94□□□□□ -0.02
VRK3-202ENST00000377011 SMARCA5O60264 1052 aaPredicted RBP14.94□□□□□ -0.02
VRK3-202ENST00000377011 RASA3Q14644 834 aa14.94□□□□□ -0.02
VRK3-202ENST00000377011 GPR108Q9NPR9 543 aa14.94□□□□□ -0.02
VRK3-202ENST00000377011 ABCF2Q9UG63 623 aa14.94□□□□□ -0.02
VRK3-202ENST00000377011 SALL1Q9NSC2 1324 aa14.94□□□□□ -0.02
VRK3-202ENST00000377011 SLURP2P0DP57 97 aa14.93□□□□□ -0.02
VRK3-202ENST00000377011 SPATA5Q8NB90 893 aa14.93□□□□□ -0.02
VRK3-202ENST00000377011 ZDHHC15Q96MV8 337 aa14.93□□□□□ -0.02
VRK3-202ENST00000377011 TEPSINQ96N21 525 aa14.93□□□□□ -0.02
VRK3-202ENST00000377011 TMEM39BQ9GZU3 492 aa14.93□□□□□ -0.02
VRK3-202ENST00000377011 GNL3LQ9NVN8 582 aaKnown RBP14.93□□□□□ -0.02
VRK3-202ENST00000377011 FAM155AB1AL88 458 aaPredicted RBP14.92□□□□□ -0.02
VRK3-202ENST00000377011 SEMA3EO15041 775 aa14.92□□□□□ -0.02
VRK3-202ENST00000377011 NFIAQ12857 509 aa14.92□□□□□ -0.02
VRK3-202ENST00000377011 TEKT1Q969V4 418 aa14.92□□□□□ -0.02
VRK3-202ENST00000377011 RTN4Q9NQC3 1192 aaKnown RBP14.92□□□□□ -0.02
VRK3-202ENST00000377011 THSD7BQ9C0I4 1608 aa14.92□□□□□ -0.02
VRK3-202ENST00000377011 LDHBP07195 334 aaKnown RBP14.92□□□□□ -0.02
VRK3-202ENST00000377011 HSPA1AP0DMV8 641 aaKnown RBP14.92□□□□□ -0.02
VRK3-202ENST00000377011 HSPA1BP0DMV9 641 aaKnown RBP14.92□□□□□ -0.02
VRK3-202ENST00000377011 MMP14P50281 582 aa14.92□□□□□ -0.02
VRK3-202ENST00000377011 GORABQ5T7V8 394 aa14.92□□□□□ -0.02
VRK3-202ENST00000377011 AACSQ86V21 672 aa14.92□□□□□ -0.02
VRK3-202ENST00000377011 APOBEC3FQ8IUX4 373 aaKnown RBP14.92□□□□□ -0.02
VRK3-202ENST00000377011 ZFPM1Q8IX07 1006 aa14.92□□□□□ -0.02
VRK3-202ENST00000377011 KIF2CQ99661 725 aa14.92□□□□□ -0.02
VRK3-202ENST00000377011 PAPPA2Q9BXP8 1791 aa14.91□□□□□ -0.02
VRK3-202ENST00000377011 FSD2A1L4K1 749 aa14.91□□□□□ -0.02
VRK3-202ENST00000377011 ZBTB22O15209 634 aa14.91□□□□□ -0.02
VRK3-202ENST00000377011 CYP2E1P05181 493 aaPredicted RBP14.91□□□□□ -0.02
VRK3-202ENST00000377011 ZAP70P43403 619 aa14.91□□□□□ -0.02
VRK3-202ENST00000377011 HDLBPQ00341 1268 aaKnown RBP14.91□□□□□ -0.02
VRK3-202ENST00000377011 MECOMQ03112 1051 aa14.91□□□□□ -0.02
VRK3-202ENST00000377011 CDC42EP5Q6NZY7 148 aa14.91□□□□□ -0.02
VRK3-202ENST00000377011 HHIPL2Q6UWX4 724 aa14.91□□□□□ -0.02
VRK3-202ENST00000377011 C2orf69Q8N8R5 385 aa14.91□□□□□ -0.02
VRK3-202ENST00000377011 PIH1D3Q9NQM4 214 aaKnown RBP14.91□□□□□ -0.02
VRK3-202ENST00000377011 TTC39AQ5SRH9 613 aa14.9□□□□□ -0.02
VRK3-202ENST00000377011 TTC22Q5TAA0 569 aa14.9□□□□□ -0.02
VRK3-202ENST00000377011 ADGRA1Q86SQ6 560 aa14.9□□□□□ -0.02
VRK3-202ENST00000377011 PLEKHM2Q8IWE5 1019 aa14.9□□□□□ -0.02
VRK3-202ENST00000377011 MRIQ9BWK5 157 aa14.9□□□□□ -0.02
VRK3-202ENST00000377011 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.9□□□□□ -0.02
VRK3-202ENST00000377011 SUGT1Q9Y2Z0 365 aa14.9□□□□□ -0.02
VRK3-202ENST00000377011 OTOFQ9HC10 1997 aa14.9□□□□□ -0.02
VRK3-202ENST00000377011 K7ELQ4 463 aaPredicted RBP14.89□□□□□ -0.03
VRK3-202ENST00000377011 RGMBQ6NW40 437 aa14.89□□□□□ -0.03
VRK3-202ENST00000377011 EDC3Q96F86 508 aaKnown RBP14.89□□□□□ -0.03
VRK3-202ENST00000377011 CLMNQ96JQ2 1002 aa14.89□□□□□ -0.03
VRK3-202ENST00000377011 GBP4Q96PP9 640 aa14.89□□□□□ -0.03
VRK3-202ENST00000377011 FAM198AQ9UFP1 575 aa14.89□□□□□ -0.03
VRK3-202ENST00000377011 PDS5AQ29RF7 1337 aaKnown RBP14.89□□□□□ -0.03
VRK3-202ENST00000377011 GAKO14976 1311 aa14.89□□□□□ -0.03
VRK3-202ENST00000377011 MYO1BO43795 1136 aa14.89□□□□□ -0.03
VRK3-202ENST00000377011 MKRN3Q13064 507 aaKnown RBP14.89□□□□□ -0.03
VRK3-202ENST00000377011 RAB3GAP1Q15042 981 aa14.89□□□□□ -0.03
VRK3-202ENST00000377011 NSUN4Q96CB9 384 aaKnown RBP14.89□□□□□ -0.03
VRK3-202ENST00000377011 TSKSQ9UJT2 592 aa14.89□□□□□ -0.03
VRK3-202ENST00000377011 ANGEL1Q9UNK9 670 aaKnown RBP14.89□□□□□ -0.03
VRK3-202ENST00000377011 GOLGA6L3A6NEY3 463 aa14.88□□□□□ -0.03
VRK3-202ENST00000377011 FOXN1O15353 648 aa14.88□□□□□ -0.03
VRK3-202ENST00000377011 TRAK2O60296 914 aa14.88□□□□□ -0.03
VRK3-202ENST00000377011 HMMRO75330 724 aa14.88□□□□□ -0.03
VRK3-202ENST00000377011 CHGBP05060 677 aa14.88□□□□□ -0.03
VRK3-202ENST00000377011 ZNF157P51786 506 aaPredicted RBP14.88□□□□□ -0.03
VRK3-202ENST00000377011 TCP10Q12799 353 aa14.88□□□□□ -0.03
VRK3-202ENST00000377011 TTLL12Q14166 644 aaPredicted RBP14.88□□□□□ -0.03
VRK3-202ENST00000377011 RABEP1Q15276 862 aa14.88□□□□□ -0.03
VRK3-202ENST00000377011 SKOR2Q2VWA4 1001 aaPredicted RBP14.88□□□□□ -0.03
VRK3-202ENST00000377011 RASAL3Q86YV0 1011 aa14.88□□□□□ -0.03
VRK3-202ENST00000377011 DDX4Q9NQI0 724 aaKnown RBP14.88□□□□□ -0.03
VRK3-202ENST00000377011 USP2O75604 605 aaPredicted RBP14.87□□□□□ -0.03
VRK3-202ENST00000377011 UQCRFS1P1P0C7P4 283 aa14.87□□□□□ -0.03
VRK3-202ENST00000377011 GSPT1P15170 499 aaKnown RBP14.87□□□□□ -0.03
VRK3-202ENST00000377011 SLFNL1Q499Z3 407 aa14.87□□□□□ -0.03
VRK3-202ENST00000377011 CCDC158Q5M9N0 1113 aa14.87□□□□□ -0.03
VRK3-202ENST00000377011 CASC1Q6TDU7 716 aa14.87□□□□□ -0.03
VRK3-202ENST00000377011 SH3BP5LQ7L8J4 393 aa14.87□□□□□ -0.03
VRK3-202ENST00000377011 DZIP1Q86YF9 867 aaKnown RBP14.87□□□□□ -0.03
VRK3-202ENST00000377011 KIF1BPQ96EK5 621 aa14.87□□□□□ -0.03
VRK3-202ENST00000377011 HHIPL1Q96JK4 782 aa14.87□□□□□ -0.03
VRK3-202ENST00000377011 USP40Q9NVE5 1235 aa14.87□□□□□ -0.03
VRK3-202ENST00000377011 WBP1LQ9NX94 342 aa14.87□□□□□ -0.03
VRK3-202ENST00000377011 RFX7Q2KHR2 1363 aa14.87□□□□□ -0.03
VRK3-202ENST00000377011 MAST3O60307 1309 aa14.86□□□□□ -0.03
VRK3-202ENST00000377011 SLC10A3P09131 477 aa14.86□□□□□ -0.03
VRK3-202ENST00000377011 BTDP43251 543 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms