RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 MYL10Q9BUA6 226 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 EFCAB5A4FU69 1503 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 CALML3P27482 149 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 USH1GQ495M9 461 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 CEP85LQ5SZL2 805 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 hCG_1642624A0A1W2PR95 340 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 VAV2P52735 878 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 TTC31Q49AM3 519 aaPredicted RBP15.38■□□□□ 0.05
COL4A1-201ENST00000375820 TTC36A6NLP5 189 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 DAPK3O43293 454 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 TXKP42681 527 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 SETDB1Q15047 1291 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 FMNL3Q8IVF7 1028 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 PPP2R3AQ06190 1150 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 EIF4A2Q14240 407 aaKnown RBP15.38■□□□□ 0.05
COL4A1-201ENST00000375820 FAM76AQ8TAV0 307 aa15.38■□□□□ 0.05
COL4A1-201ENST00000375820 EPB41P11171 864 aaKnown RBP15.37■□□□□ 0.05
COL4A1-201ENST00000375820 WDR44Q5JSH3 913 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 FAM173BQ6P4H8 233 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 INTS8Q75QN2 995 aaKnown RBP15.37■□□□□ 0.05
COL4A1-201ENST00000375820 PTPN23Q9H3S7 1636 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 UBAP1LF5GYI3 381 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 NCAPH2Q6IBW4 605 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 JDP2Q8WYK2 163 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 ZKSCAN5Q9Y2L8 839 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 RTCBQ9Y3I0 505 aaKnown RBP15.37■□□□□ 0.05
COL4A1-201ENST00000375820 TNFAIP3P21580 790 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 FAM204AQ9H8W3 233 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 AKR1B15C9JRZ8 316 aaPredicted RBP15.37■□□□□ 0.05
COL4A1-201ENST00000375820 TIMM10P62072 90 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 KRBA2Q6ZNG9 492 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 ZNF594Q96JF6 807 aaPredicted RBP15.37■□□□□ 0.05
COL4A1-201ENST00000375820 FAM89AQ96GI7 184 aa15.37■□□□□ 0.05
COL4A1-201ENST00000375820 SEC24BO95487 1268 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 CEP85Q6P2H3 762 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 DYMQ7RTS9 669 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 MTUS1Q9ULD2 1270 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 TNNC1P63316 161 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 GNA11P29992 359 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 EVCP57679 992 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 MSANTD4Q8NCY6 345 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 PPIP5K1Q6PFW1 1433 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 CCDC14Q49A88 953 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 AKAP4Q5JQC9 854 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 TPTE2Q6XPS3 522 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 MRC2Q9UBG0 1479 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 TEX11Q8IYF3 940 aa15.36■□□□□ 0.05
COL4A1-201ENST00000375820 GNPATO15228 680 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 RLBP1P12271 317 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 CTDSPL2Q05D32 466 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 PTPROQ16827 1216 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 IGSF22Q8N9C0 903 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 TRIM6Q9C030 488 aaPredicted RBP15.35■□□□□ 0.05
COL4A1-201ENST00000375820 NYXQ9GZU5 481 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 NOD1Q9Y239 953 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 GMNNO75496 209 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 GAS8O95995 478 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 DHX32Q7L7V1 743 aaKnown RBP15.35■□□□□ 0.05
COL4A1-201ENST00000375820 CCDC117Q8IWD4 279 aaPredicted RBP15.35■□□□□ 0.05
COL4A1-201ENST00000375820 STMN2Q93045 179 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 ZNF131P52739 623 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 TCP10Q12799 353 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 IQUBQ8NA54 791 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 SCAF11Q99590 1463 aaKnown RBP15.35■□□□□ 0.05
COL4A1-201ENST00000375820 STX10O60499 249 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 KLHL7Q8IXQ5 586 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 VPS52Q8N1B4 723 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.35■□□□□ 0.05
COL4A1-201ENST00000375820 TAF5LO75529 589 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 TBC1D8BQ0IIM8 1120 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 C8orf34Q49A92 452 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 STAMQ92783 540 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 NKIRAS1Q9NYS0 192 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 STIM2Q9P246 746 aa15.35■□□□□ 0.05
COL4A1-201ENST00000375820 UFL1O94874 794 aa15.34■□□□□ 0.05
COL4A1-201ENST00000375820 GNAT2P19087 354 aa15.34■□□□□ 0.05
COL4A1-201ENST00000375820 PCF11O94913 1555 aaKnown RBP15.34■□□□□ 0.05
COL4A1-201ENST00000375820 KRT19P08727 400 aa15.34■□□□□ 0.05
COL4A1-201ENST00000375820 GKAP1Q5VSY0 366 aaPredicted RBP15.34■□□□□ 0.05
COL4A1-201ENST00000375820 MSH6P52701 1360 aa15.34■□□□□ 0.05
COL4A1-201ENST00000375820 POLR2DO15514 142 aaKnown RBP15.34■□□□□ 0.05
COL4A1-201ENST00000375820 ATXN8OSP0DMR3 200 aa15.34■□□□□ 0.05
COL4A1-201ENST00000375820 NELFCDQ8IXH7 590 aa15.34■□□□□ 0.05
COL4A1-201ENST00000375820 AATFQ9NY61 560 aaKnown RBP eCLIP15.34■□□□□ 0.05
COL4A1-201ENST00000375820 CIB2O75838 187 aa15.34■□□□□ 0.05
COL4A1-201ENST00000375820 MAGI1Q96QZ7 1491 aaPredicted RBP15.34■□□□□ 0.05
COL4A1-201ENST00000375820 ASIC2Q16515 512 aa15.34■□□□□ 0.05
COL4A1-201ENST00000375820 LRMPQ12912 555 aa15.34■□□□□ 0.05
COL4A1-201ENST00000375820 TRPC3Q13507 836 aa15.34■□□□□ 0.05
COL4A1-201ENST00000375820 V9GY48 417 aaPredicted RBP15.34■□□□□ 0.05
COL4A1-201ENST00000375820 PLB1Q6P1J6 1458 aa15.33■□□□□ 0.05
COL4A1-201ENST00000375820 BSPRYQ5W0U4 402 aa15.33■□□□□ 0.05
COL4A1-201ENST00000375820 CPXCR1Q8N123 301 aa15.33■□□□□ 0.05
COL4A1-201ENST00000375820 KIAA1524Q8TCG1 905 aa15.33■□□□□ 0.05
COL4A1-201ENST00000375820 OTUD7AQ8TE49 926 aaPredicted RBP15.33■□□□□ 0.05
COL4A1-201ENST00000375820 PPP1R12CQ9BZL4 782 aa15.33■□□□□ 0.05
COL4A1-201ENST00000375820 TSGA10Q9BZW7 698 aa15.33■□□□□ 0.05
COL4A1-201ENST00000375820 MYO1AQ9UBC5 1043 aa15.33■□□□□ 0.05
COL4A1-201ENST00000375820 TRAF1Q13077 416 aa15.33■□□□□ 0.04
COL4A1-201ENST00000375820 GDAP1L1Q96MZ0 367 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms