RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 RPS6KB1P23443 525 aa13.27□□□□□ -0.28
PTPN1-201ENST00000371621 CCDC50Q8IVM0 306 aa13.27□□□□□ -0.28
PTPN1-201ENST00000371621 TRIM22Q8IYM9 498 aa13.27□□□□□ -0.28
PTPN1-201ENST00000371621 ACRBPQ8NEB7 543 aa13.27□□□□□ -0.28
PTPN1-201ENST00000371621 BACH1O14867 736 aa13.27□□□□□ -0.29
PTPN1-201ENST00000371621 NBPF7P0C2Y1 421 aaPredicted RBP13.27□□□□□ -0.29
PTPN1-201ENST00000371621 RRAGBQ5VZM2 374 aa13.27□□□□□ -0.29
PTPN1-201ENST00000371621 C8orf74Q6P047 294 aa13.27□□□□□ -0.29
PTPN1-201ENST00000371621 NAA15Q9BXJ9 866 aaKnown RBP13.27□□□□□ -0.29
PTPN1-201ENST00000371621 ADGRL2O95490 1459 aa13.27□□□□□ -0.29
PTPN1-201ENST00000371621 CACNA2D4Q7Z3S7 1137 aa13.27□□□□□ -0.29
PTPN1-201ENST00000371621 EDC3Q96F86 508 aaKnown RBP13.27□□□□□ -0.29
PTPN1-201ENST00000371621 ALS2CR12Q96Q35 445 aa13.27□□□□□ -0.29
PTPN1-201ENST00000371621 KAT14Q9H8E8 782 aa13.27□□□□□ -0.29
PTPN1-201ENST00000371621 KLC4Q9NSK0 619 aa13.27□□□□□ -0.29
PTPN1-201ENST00000371621 ARHGEF12Q9NZN5 1544 aa13.27□□□□□ -0.29
PTPN1-201ENST00000371621 TRAPPC8Q9Y2L5 1435 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 ERCC3P19447 782 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 SLC8A1P32418 973 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 CNGA4Q8IV77 575 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 EHBP1Q8NDI1 1231 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 KIF9Q9HAQ2 790 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 MTF1Q14872 753 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 WHAMMP3Q1A5X7 153 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 C1orf141Q5JVX7 400 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 CCDC85AQ96PX6 553 aaPredicted RBP13.26□□□□□ -0.29
PTPN1-201ENST00000371621 RTEL1-TNFRSF6BF6WH68 1400 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 MBD5Q9P267 1494 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 STX10O60499 249 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 SRGAP2O75044 1071 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 SLC7A5Q01650 507 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 ZRSR2Q15696 482 aaKnown RBP13.26□□□□□ -0.29
PTPN1-201ENST00000371621 ALG1Q9BT22 464 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 SNRKQ9NRH2 765 aa13.26□□□□□ -0.29
PTPN1-201ENST00000371621 TTF2Q9UNY4 1162 aaKnown RBP13.26□□□□□ -0.29
PTPN1-201ENST00000371621 LUC7L2Q9Y383 392 aaKnown RBP13.26□□□□□ -0.29
PTPN1-201ENST00000371621 CHD1O14646 1710 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 CUTAO60888 179 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 MTIF2P46199 727 aaKnown RBP13.25□□□□□ -0.29
PTPN1-201ENST00000371621 ARID5AQ03989 594 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 PSME1Q06323 249 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 A2MP01023 1474 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 FAM170AA1A519 330 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 CAND2O75155 1236 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 TACC1O75410 805 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 MYL6BP14649 208 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 CYLC1P35663 651 aaPredicted RBP13.25□□□□□ -0.29
PTPN1-201ENST00000371621 CACNA2D3Q8IZS8 1091 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 CCDC42Q96M95 316 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 SAMD15Q9P1V8 674 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 USH1CQ9Y6N9 552 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 IQCB1Q15051 598 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 SARM1Q6SZW1 724 aa13.25□□□□□ -0.29
PTPN1-201ENST00000371621 POLR2DO15514 142 aaKnown RBP13.24□□□□□ -0.29
PTPN1-201ENST00000371621 LACTBP83111 547 aaPredicted RBP13.24□□□□□ -0.29
PTPN1-201ENST00000371621 TRIM31Q9BZY9 425 aa13.24□□□□□ -0.29
PTPN1-201ENST00000371621 L2HGDHQ9H9P8 463 aa13.24□□□□□ -0.29
PTPN1-201ENST00000371621 BIN2Q9UBW5 565 aaPredicted RBP13.24□□□□□ -0.29
PTPN1-201ENST00000371621 PARP3Q9Y6F1 533 aa13.24□□□□□ -0.29
PTPN1-201ENST00000371621 SOS1Q07889 1333 aaPredicted RBP13.24□□□□□ -0.29
PTPN1-201ENST00000371621 EXOC5O00471 708 aa13.24□□□□□ -0.29
PTPN1-201ENST00000371621 PFKFB1P16118 471 aa13.24□□□□□ -0.29
PTPN1-201ENST00000371621 XBP1P17861 261 aa13.24□□□□□ -0.29
PTPN1-201ENST00000371621 PROSER2Q86WR7 435 aaPredicted RBP13.24□□□□□ -0.29
PTPN1-201ENST00000371621 CDK5RAP3Q96JB5 506 aa13.24□□□□□ -0.29
PTPN1-201ENST00000371621 SEPT14Q6ZU15 432 aa13.24□□□□□ -0.29
PTPN1-201ENST00000371621 TBC1D1Q86TI0 1168 aaPredicted RBP13.24□□□□□ -0.29
PTPN1-201ENST00000371621 HMG20BQ9P0W2 317 aa13.24□□□□□ -0.29
PTPN1-201ENST00000371621 FAM135AQ9P2D6 1515 aa13.24□□□□□ -0.29
PTPN1-201ENST00000371621 SETSIPP0DME0 302 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 PTPROQ16827 1216 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 SH3GL3Q99963 347 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 KCNH3Q9ULD8 1083 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 CDC42BPAQ5VT25 1732 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 ABCC4O15439 1325 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 RAPGEF3O95398 923 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 HMGB1P09429 215 aaKnown RBP13.23□□□□□ -0.29
PTPN1-201ENST00000371621 CXCR5P32302 372 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 SESN3P58005 492 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 ZFYVE27Q5T4F4 411 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 CAPRIN2Q6IMN6 1127 aaKnown RBP13.23□□□□□ -0.29
PTPN1-201ENST00000371621 KLHL7Q8IXQ5 586 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 LMNTD2Q8IXW0 634 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 USHBP1Q8N6Y0 703 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 LUC7LQ9NQ29 371 aaKnown RBP13.23□□□□□ -0.29
PTPN1-201ENST00000371621 ZRANB1Q9UGI0 708 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 CASP14P31944 242 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 ANO1Q5XXA6 986 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 ADALQ6DHV7 355 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 GIGYF2Q6Y7W6 1299 aaKnown RBP13.23□□□□□ -0.29
PTPN1-201ENST00000371621 WAPLQ7Z5K2 1190 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 SH2D3CQ8N5H7 860 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 JAKMIP2Q96AA8 810 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 FUCA2Q9BTY2 467 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 SLC26A6Q9BXS9 759 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 EHD4Q9H223 541 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 ZSWIM6Q9HCJ5 1215 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 TAB2Q9NYJ8 693 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 CLIC4Q9Y696 253 aa13.23□□□□□ -0.29
PTPN1-201ENST00000371621 FOXO3O43524 673 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms