RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PIH1D3Q9NQM4 214 aaKnown RBP14.01□□□□□ -0.17
CLIP3-201ENST00000360535 FANCLQ9NW38 375 aa14.01□□□□□ -0.17
CLIP3-201ENST00000360535 WWC3Q9ULE0 1092 aa14.01□□□□□ -0.17
CLIP3-201ENST00000360535 IQSEC3Q9UPP2 1182 aaPredicted RBP14.01□□□□□ -0.17
CLIP3-201ENST00000360535 IFIT3O14879 490 aaKnown RBP14□□□□□ -0.17
CLIP3-201ENST00000360535 ZBTB43O43298 467 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 PHKA1P46020 1223 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 LONRF3Q496Y0 759 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 SHC4Q6S5L8 630 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 OLFM4Q6UX06 510 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 TRMT44Q8IYL2 757 aaKnown RBP14□□□□□ -0.17
CLIP3-201ENST00000360535 GRAMD1CQ8IYS0 662 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 GTPBP4Q9BZE4 634 aaKnown RBP14□□□□□ -0.17
CLIP3-201ENST00000360535 ARFGEF2Q9Y6D5 1785 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 CMA1P23946 247 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 CREBRFQ8IUR6 639 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 EPC1Q9H2F5 836 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 TMOD3Q9NYL9 352 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 DDX41Q9UJV9 622 aaKnown RBP14□□□□□ -0.17
CLIP3-201ENST00000360535 CIAO1O76071 339 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 NCAPHQ15003 741 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 SLC39A14Q15043 492 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 ERO1AQ96HE7 468 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 TRMT112Q9UI30 125 aaKnown RBP14□□□□□ -0.17
CLIP3-201ENST00000360535 TBC1D2BQ9UPU7 963 aa14□□□□□ -0.17
CLIP3-201ENST00000360535 TOP1P11387 765 aaKnown RBP13.99□□□□□ -0.17
CLIP3-201ENST00000360535 APOA5Q6Q788 366 aa13.99□□□□□ -0.17
CLIP3-201ENST00000360535 CCDC150Q8NCX0 1101 aa13.99□□□□□ -0.17
CLIP3-201ENST00000360535 NBPF3Q9H094 633 aa13.99□□□□□ -0.17
CLIP3-201ENST00000360535 hCG_1642624A0A1W2PR95 340 aa13.99□□□□□ -0.17
CLIP3-201ENST00000360535 BTBD18B2RXH4 712 aa13.99□□□□□ -0.17
CLIP3-201ENST00000360535 OSBPL5Q9H0X9 879 aaPredicted RBP13.99□□□□□ -0.17
CLIP3-201ENST00000360535 PCDHA5Q9Y5H7 936 aa13.99□□□□□ -0.17
CLIP3-201ENST00000360535 TMEM94Q12767 1356 aa13.99□□□□□ -0.17
CLIP3-201ENST00000360535 GRIN1Q05586 938 aa13.99□□□□□ -0.17
CLIP3-201ENST00000360535 ARHGAP29Q52LW3 1261 aa13.99□□□□□ -0.17
CLIP3-201ENST00000360535 MNS1Q8NEH6 495 aa13.99□□□□□ -0.17
CLIP3-201ENST00000360535 NEDD4P46934 1319 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 PCDH11XQ9BZA7 1347 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 PCDH11YQ9BZA8 1340 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 UTP14CQ5TAP6 766 aaKnown RBP13.98□□□□□ -0.17
CLIP3-201ENST00000360535 NAPBQ9H115 298 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 ARMT1Q9H993 441 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 SLC12A7Q9Y666 1083 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 GUCY1A2P33402 732 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 ADKP55263 362 aaKnown RBP13.98□□□□□ -0.17
CLIP3-201ENST00000360535 KLHL10Q6JEL2 608 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 KRT222Q8N1A0 295 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 MAGEB6Q8N7X4 407 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 MIGA1Q8NAN2 632 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 IMPACTQ9P2X3 320 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 KCNH3Q9ULD8 1083 aa13.98□□□□□ -0.17
CLIP3-201ENST00000360535 ANKRD18BA2A2Z9 1011 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 PRKAB2O43741 272 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 ADD2P35612 726 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 MYL5Q02045 173 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 CCDC102BQ68D86 513 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 JMYQ8N9B5 988 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 CPLX3Q8WVH0 158 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 ZSWIM4Q9H7M6 989 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 PDE4BQ07343 736 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 FOXP4Q8IVH2 680 aaPredicted RBP13.97□□□□□ -0.17
CLIP3-201ENST00000360535 ISCA1Q9BUE6 129 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 ZMYM6O95789 1325 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 IRS4O14654 1257 aaPredicted RBP13.97□□□□□ -0.17
CLIP3-201ENST00000360535 MBD4O95243 580 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 IL2RBP14784 551 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 PDE6AP16499 860 aa13.97□□□□□ -0.17
CLIP3-201ENST00000360535 SH2B2O14492 632 aaPredicted RBP13.96□□□□□ -0.17
CLIP3-201ENST00000360535 POLR2DO15514 142 aaKnown RBP13.96□□□□□ -0.17
CLIP3-201ENST00000360535 RANBP6O60518 1105 aaKnown RBP13.96□□□□□ -0.17
CLIP3-201ENST00000360535 COBLO75128 1261 aa13.96□□□□□ -0.17
CLIP3-201ENST00000360535 CDKL5O76039 1030 aa13.96□□□□□ -0.17
CLIP3-201ENST00000360535 SSRP1Q08945 709 aaKnown RBP13.96□□□□□ -0.17
CLIP3-201ENST00000360535 METTL16Q86W50 562 aaKnown RBP13.96□□□□□ -0.17
CLIP3-201ENST00000360535 CARD6Q9BX69 1037 aa13.96□□□□□ -0.17
CLIP3-201ENST00000360535 ZSWIM5Q9P217 1185 aa13.96□□□□□ -0.17
CLIP3-201ENST00000360535 TDO2P48775 406 aa13.96□□□□□ -0.17
CLIP3-201ENST00000360535 EVCP57679 992 aa13.96□□□□□ -0.17
CLIP3-201ENST00000360535 NR5A1Q13285 461 aa13.96□□□□□ -0.17
CLIP3-201ENST00000360535 SYCP1Q15431 976 aa13.96□□□□□ -0.17
CLIP3-201ENST00000360535 UBXN4Q92575 508 aa13.96□□□□□ -0.17
CLIP3-201ENST00000360535 MINDY4BA8MYZ0 360 aa13.96□□□□□ -0.18
CLIP3-201ENST00000360535 STX17P56962 302 aa13.96□□□□□ -0.18
CLIP3-201ENST00000360535 ZBTB38Q8NAP3 1195 aaPredicted RBP13.96□□□□□ -0.18
CLIP3-201ENST00000360535 TTLL11Q8NHH1 800 aa13.96□□□□□ -0.18
CLIP3-201ENST00000360535 DESI2Q9BSY9 194 aa13.96□□□□□ -0.18
CLIP3-201ENST00000360535 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.96□□□□□ -0.18
CLIP3-201ENST00000360535 MYH15Q9Y2K3 1946 aa13.95□□□□□ -0.18
CLIP3-201ENST00000360535 BAZ2BQ9UIF8 2168 aaKnown RBP13.95□□□□□ -0.18
CLIP3-201ENST00000360535 POLR3GO15318 223 aaPredicted RBP13.95□□□□□ -0.18
CLIP3-201ENST00000360535 CASP1P29466 404 aa13.95□□□□□ -0.18
CLIP3-201ENST00000360535 KARSQ15046 597 aaKnown RBP13.95□□□□□ -0.18
CLIP3-201ENST00000360535 ERVV-2B6SEH9 535 aa13.95□□□□□ -0.18
CLIP3-201ENST00000360535 PCCAP05165 728 aaPredicted RBP13.95□□□□□ -0.18
CLIP3-201ENST00000360535 PRR29P0C7W0 189 aa13.95□□□□□ -0.18
CLIP3-201ENST00000360535 AFMP43652 599 aa13.95□□□□□ -0.18
CLIP3-201ENST00000360535 SAFBQ15424 915 aaKnown RBP eCLIP13.95□□□□□ -0.18
CLIP3-201ENST00000360535 DIS3L2Q8IYB7 885 aaKnown RBP13.95□□□□□ -0.18
CLIP3-201ENST00000360535 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms