RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 SBNO2Q9Y2G9 1366 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 CTAGE9A4FU28 777 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 IL2RBP14784 551 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 UBXN1Q04323 297 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 STRN3Q13033 797 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 UBLCP1Q8WVY7 318 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-202ENST00000358808 CCDC42Q96M95 316 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 CSRNP2Q9H175 543 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 PREX2Q70Z35 1606 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 MCM6Q14566 821 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 GPR161Q8N6U8 529 aaKnown RBP11.42□□□□□ -0.58
CLIP1-202ENST00000358808 SH2D4AQ9H788 454 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 TTLL3Q9Y4R7 772 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 RPRD2Q5VT52 1461 aaKnown RBP11.42□□□□□ -0.58
CLIP1-202ENST00000358808 MAP7Q14244 749 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 ZSCAN16Q9H4T2 348 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-202ENST00000358808 NKIRAS1Q9NYS0 192 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 SWAP70Q9UH65 585 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 KDM5DQ9BY66 1539 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 RTL9Q8NET4 1388 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 SPDYE16A6NNV3 312 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-202ENST00000358808 VIMP08670 466 aaKnown RBP11.42□□□□□ -0.58
CLIP1-202ENST00000358808 KRT2P35908 639 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 RAB3GAP1Q15042 981 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 SPDYE2Q495Y8 402 aa11.42□□□□□ -0.58
CLIP1-202ENST00000358808 SDCCAG8Q86SQ7 713 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-202ENST00000358808 MAGI3Q5TCQ9 1506 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 CHMP2AO43633 222 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 KRT86O43790 486 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 PLCG2P16885 1265 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 ARID4AP29374 1257 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-202ENST00000358808 MARCKSP29966 332 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-202ENST00000358808 SRGAP1Q7Z6B7 1085 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 CABLES1Q8TDN4 633 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 LRRC59Q96AG4 307 aaKnown RBP11.41□□□□□ -0.58
CLIP1-202ENST00000358808 PLIN2Q99541 437 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 LRRC2Q9BYS8 371 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 ANO3Q9BYT9 981 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 FYB2Q5VWT5 728 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 GBP7Q8N8V2 638 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-202ENST00000358808 MCM9Q9NXL9 1143 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 PI4KAP2A4QPH2 592 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 GKAP1Q5VSY0 366 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-202ENST00000358808 FMNL3Q8IVF7 1028 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 PI4KAP1Q8N8J0 262 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 FAM200AQ8TCP9 573 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 BRF1Q92994 677 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 CNGA1P29973 690 aa11.41□□□□□ -0.58
CLIP1-202ENST00000358808 SPOPO43791 374 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 ATXN8OSP0DMR3 200 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 NEDD9Q14511 834 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 DNAJC21Q5F1R6 531 aaKnown RBP11.4□□□□□ -0.58
CLIP1-202ENST00000358808 MICALL1Q8N3F8 863 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 IFT74Q96LB3 600 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 RIOK1Q9BRS2 568 aaKnown RBP11.4□□□□□ -0.58
CLIP1-202ENST00000358808 DNAI1Q9UI46 699 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 TBX22Q9Y458 520 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 PAXBP1Q9Y5B6 917 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 ABCC1P33527 1531 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 SAMD9LQ8IVG5 1584 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 ZEB2O60315 1214 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 EPB41P11171 864 aaKnown RBP11.4□□□□□ -0.58
CLIP1-202ENST00000358808 SMTNP53814 917 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 RARSP54136 660 aaKnown RBP11.4□□□□□ -0.58
CLIP1-202ENST00000358808 KCNG4Q8TDN1 519 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 STK32BQ9NY57 414 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 PTPRKQ15262 1439 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 PPIP5K1Q6PFW1 1433 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 LIN9Q5TKA1 542 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 VCX3BQ9H321 246 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 SEPT10Q9P0V9 454 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 IVLP07476 585 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 RPL13P26373 211 aaKnown RBP11.4□□□□□ -0.58
CLIP1-202ENST00000358808 LACTBP83111 547 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-202ENST00000358808 RILPL1Q5EBL4 403 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 DZIP3Q86Y13 1208 aaKnown RBP11.4□□□□□ -0.58
CLIP1-202ENST00000358808 FAM114A2Q9NRY5 505 aa11.4□□□□□ -0.58
CLIP1-202ENST00000358808 NSFL1CQ9UNZ2 370 aaKnown RBP11.4□□□□□ -0.58
CLIP1-202ENST00000358808 FAM83GA6ND36 823 aa11.4□□□□□ -0.59
CLIP1-202ENST00000358808 KCNA6P17658 529 aa11.4□□□□□ -0.59
CLIP1-202ENST00000358808 ATP5DP30049 168 aa11.4□□□□□ -0.59
CLIP1-202ENST00000358808 PLCB4Q15147 1175 aa11.4□□□□□ -0.59
CLIP1-202ENST00000358808 TPTE2Q6XPS3 522 aa11.4□□□□□ -0.59
CLIP1-202ENST00000358808 ZBTB9Q96C00 473 aa11.4□□□□□ -0.59
CLIP1-202ENST00000358808 NOX5Q96PH1 765 aa11.4□□□□□ -0.59
CLIP1-202ENST00000358808 ARFGAP3Q9NP61 516 aa11.4□□□□□ -0.59
CLIP1-202ENST00000358808 GUCA1BQ9UMX6 200 aa11.4□□□□□ -0.59
CLIP1-202ENST00000358808 ESYT2A0FGR8 921 aa11.39□□□□□ -0.59
CLIP1-202ENST00000358808 CALML3P27482 149 aa11.39□□□□□ -0.59
CLIP1-202ENST00000358808 GTF2A1P52655 376 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-202ENST00000358808 TNNC1P63316 161 aa11.39□□□□□ -0.59
CLIP1-202ENST00000358808 CCDC170Q8IYT3 715 aa11.39□□□□□ -0.59
CLIP1-202ENST00000358808 RBM27Q9P2N5 1060 aaKnown RBP11.39□□□□□ -0.59
CLIP1-202ENST00000358808 SLC39A6Q13433 755 aa11.39□□□□□ -0.59
CLIP1-202ENST00000358808 TRIM75PA6NK02 468 aa11.39□□□□□ -0.59
CLIP1-202ENST00000358808 PRKG1Q13976 671 aa11.39□□□□□ -0.59
CLIP1-202ENST00000358808 CDAN1Q8IWY9 1227 aa11.39□□□□□ -0.59
CLIP1-202ENST00000358808 NECAB1Q8N987 351 aa11.39□□□□□ -0.59
CLIP1-202ENST00000358808 PSPC1Q8WXF1 523 aaKnown RBP11.39□□□□□ -0.59
CLIP1-202ENST00000358808 OATP04181 439 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms