RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ZMYND15Q9H091 742 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 ARMT1Q9H993 441 aa25.36■■□□□ 1.65
SHMT1-202ENST00000352886 NIP7Q9Y221 180 aaKnown RBP eCLIP25.36■■□□□ 1.65
SHMT1-202ENST00000352886 HSP90AA2PQ14568 343 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-202ENST00000352886 SYNE3Q6ZMZ3 975 aa25.35■■□□□ 1.65
SHMT1-202ENST00000352886 MARCH10Q8NA82 808 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-202ENST00000352886 IGDCC4Q8TDY8 1250 aa25.35■■□□□ 1.65
SHMT1-202ENST00000352886 THRAP3Q9Y2W1 955 aaKnown RBP25.35■■□□□ 1.65
SHMT1-202ENST00000352886 A0A087WWV3 80 aa25.35■■□□□ 1.65
SHMT1-202ENST00000352886 SPTLC2O15270 562 aa25.35■■□□□ 1.65
SHMT1-202ENST00000352886 CDKL5O76039 1030 aa25.35■■□□□ 1.65
SHMT1-202ENST00000352886 CDC27P30260 824 aa25.35■■□□□ 1.65
SHMT1-202ENST00000352886 IGHMBP2P38935 993 aaKnown RBP25.35■■□□□ 1.65
SHMT1-202ENST00000352886 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-202ENST00000352886 ERCC4Q92889 916 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-202ENST00000352886 ALG1Q9BT22 464 aa25.35■■□□□ 1.65
SHMT1-202ENST00000352886 RREB1Q92766 1687 aa25.35■■□□□ 1.65
SHMT1-202ENST00000352886 NRAPQ86VF7 1730 aa25.35■■□□□ 1.65
SHMT1-202ENST00000352886 RRP9O43818 475 aaKnown RBP25.34■■□□□ 1.65
SHMT1-202ENST00000352886 NTSR2O95665 410 aa25.34■■□□□ 1.65
SHMT1-202ENST00000352886 BCAMP50895 628 aa25.34■■□□□ 1.65
SHMT1-202ENST00000352886 NDUFA8P51970 172 aa25.34■■□□□ 1.65
SHMT1-202ENST00000352886 CTDSPL2Q05D32 466 aa25.34■■□□□ 1.65
SHMT1-202ENST00000352886 NFXL1Q6ZNB6 911 aa25.34■■□□□ 1.65
SHMT1-202ENST00000352886 CCDC186Q7Z3E2 898 aa25.34■■□□□ 1.65
SHMT1-202ENST00000352886 CCDC144CPQ8IYA2 1237 aa25.34■■□□□ 1.65
SHMT1-202ENST00000352886 ECM29Q5VYK3 1845 aa25.34■■□□□ 1.65
SHMT1-202ENST00000352886 LY9Q9HBG7 655 aa25.34■■□□□ 1.65
SHMT1-202ENST00000352886 LAMB2P55268 1798 aa25.33■■□□□ 1.65
SHMT1-202ENST00000352886 ZBTB43O43298 467 aa25.33■■□□□ 1.65
SHMT1-202ENST00000352886 TMEM67Q5HYA8 995 aa25.33■■□□□ 1.65
SHMT1-202ENST00000352886 CPLX2Q6PUV4 134 aaKnown RBP25.33■■□□□ 1.65
SHMT1-202ENST00000352886 PHKBQ93100 1093 aa25.33■■□□□ 1.65
SHMT1-202ENST00000352886 SDF4Q9BRK5 362 aa25.33■■□□□ 1.65
SHMT1-202ENST00000352886 ANO10Q9NW15 660 aa25.33■■□□□ 1.65
SHMT1-202ENST00000352886 NRBP1Q9UHY1 535 aa25.33■■□□□ 1.65
SHMT1-202ENST00000352886 TAOK2Q9UL54 1235 aa25.33■■□□□ 1.64
SHMT1-202ENST00000352886 ANO1Q5XXA6 986 aa25.32■■□□□ 1.64
SHMT1-202ENST00000352886 ZSWIM5Q9P217 1185 aa25.32■■□□□ 1.64
SHMT1-202ENST00000352886 SGMS1Q86VZ5 419 aa25.32■■□□□ 1.64
SHMT1-202ENST00000352886 RGS22Q8NE09 1264 aa25.32■■□□□ 1.64
SHMT1-202ENST00000352886 MYL10Q9BUA6 226 aa25.32■■□□□ 1.64
SHMT1-202ENST00000352886 GSG1L2A8MUP6 293 aa25.31■■□□□ 1.64
SHMT1-202ENST00000352886 CLIP2Q9UDT6 1046 aa25.31■■□□□ 1.64
SHMT1-202ENST00000352886 RTL9Q8NET4 1388 aa25.31■■□□□ 1.64
SHMT1-202ENST00000352886 BECN2A8MW95 431 aa25.31■■□□□ 1.64
SHMT1-202ENST00000352886 PRKAB2O43741 272 aa25.31■■□□□ 1.64
SHMT1-202ENST00000352886 CHRNDQ07001 517 aa25.31■■□□□ 1.64
SHMT1-202ENST00000352886 TACC3Q9Y6A5 838 aa25.31■■□□□ 1.64
SHMT1-202ENST00000352886 GOLGA8AA7E2F4 631 aa25.3■■□□□ 1.64
SHMT1-202ENST00000352886 KRT40Q6A162 431 aa25.3■■□□□ 1.64
SHMT1-202ENST00000352886 SARM1Q6SZW1 724 aa25.3■■□□□ 1.64
SHMT1-202ENST00000352886 VPS37DQ86XT2 251 aa25.3■■□□□ 1.64
SHMT1-202ENST00000352886 LCORLQ8N3X6 602 aa25.3■■□□□ 1.64
SHMT1-202ENST00000352886 TIAM2Q8IVF5 1701 aa25.3■■□□□ 1.64
SHMT1-202ENST00000352886 IFIT3O14879 490 aaKnown RBP25.29■■□□□ 1.64
SHMT1-202ENST00000352886 NTRK3Q16288 839 aa25.29■■□□□ 1.64
SHMT1-202ENST00000352886 AKNAD1Q5T1N1 836 aa25.29■■□□□ 1.64
SHMT1-202ENST00000352886 DHX40Q8IX18 779 aaKnown RBP25.29■■□□□ 1.64
SHMT1-202ENST00000352886 IARSP41252 1262 aaKnown RBP25.29■■□□□ 1.64
SHMT1-202ENST00000352886 LIFRP42702 1097 aa25.29■■□□□ 1.64
SHMT1-202ENST00000352886 CEP57L1Q8IYX8 460 aa25.29■■□□□ 1.64
SHMT1-202ENST00000352886 FBXW7Q969H0 707 aa25.29■■□□□ 1.64
SHMT1-202ENST00000352886 CNNM2Q9H8M5 875 aa25.29■■□□□ 1.64
SHMT1-202ENST00000352886 BCORQ6W2J9 1755 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 DYNC1I1O14576 645 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 RANBP6O60518 1105 aaKnown RBP25.28■■□□□ 1.64
SHMT1-202ENST00000352886 TDO2P48775 406 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 RBM10P98175 930 aaKnown RBP25.28■■□□□ 1.64
SHMT1-202ENST00000352886 LRMPQ12912 555 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 FAM217BQ9NTX9 383 aaPredicted RBP25.28■■□□□ 1.64
SHMT1-202ENST00000352886 SLC12A7Q9Y666 1083 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 SLC4A4Q9Y6R1 1079 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 CICQ96RK0 1608 aaPredicted RBP25.28■■□□□ 1.64
SHMT1-202ENST00000352886 COL4A1P02462 1669 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 GNAT2P19087 354 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 CDC25BP30305 580 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 MFSD6Q6ZSS7 791 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 PRIMPOLQ96LW4 560 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 KRT23Q9C075 422 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 LRP2BPQ9P2M1 347 aa25.28■■□□□ 1.64
SHMT1-202ENST00000352886 AXDND1Q5T1B0 1012 aaPredicted RBP25.27■■□□□ 1.64
SHMT1-202ENST00000352886 MIGA1Q8NAN2 632 aa25.27■■□□□ 1.64
SHMT1-202ENST00000352886 NACAP1Q9BZK3 213 aa25.27■■□□□ 1.64
SHMT1-202ENST00000352886 PNPLA7Q6ZV29 1317 aa25.27■■□□□ 1.64
SHMT1-202ENST00000352886 CCDC69A6NI79 296 aa25.27■■□□□ 1.64
SHMT1-202ENST00000352886 GNL2Q13823 731 aaKnown RBP25.27■■□□□ 1.64
SHMT1-202ENST00000352886 MYRIPQ8NFW9 859 aa25.27■■□□□ 1.64
SHMT1-202ENST00000352886 KIAA1468Q9P260 1216 aa25.27■■□□□ 1.64
SHMT1-202ENST00000352886 MARCKSP29966 332 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-202ENST00000352886 SLC39A14Q15043 492 aa25.26■■□□□ 1.63
SHMT1-202ENST00000352886 RRP12Q5JTH9 1297 aaKnown RBP25.26■■□□□ 1.63
SHMT1-202ENST00000352886 NAT10Q9H0A0 1025 aaKnown RBP25.26■■□□□ 1.63
SHMT1-202ENST00000352886 TOMM22Q9NS69 142 aa25.26■■□□□ 1.63
SHMT1-202ENST00000352886 IQSEC3Q9UPP2 1182 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-202ENST00000352886 ZNF202O95125 648 aa25.26■■□□□ 1.63
SHMT1-202ENST00000352886 ZNF652Q9Y2D9 606 aa25.26■■□□□ 1.63
SHMT1-202ENST00000352886 SPATA31A5Q5VU36 1347 aa25.26■■□□□ 1.63
SHMT1-202ENST00000352886 SPATA31A7Q8IWB4 1347 aa25.26■■□□□ 1.63
SHMT1-202ENST00000352886 BCL9LQ86UU0 1499 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms