RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 NFIAQ12857 509 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 STRIP1Q5VSL9 837 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 RAB11FIP4Q86YS3 637 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 PRMT6Q96LA8 375 aaPredicted RBP11.01□□□□□ -0.65
USP4-202ENST00000351842 CNOT7Q9UIV1 285 aaKnown RBP11.01□□□□□ -0.65
USP4-202ENST00000351842 CLEC11AQ9Y240 323 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 RBM8AQ9Y5S9 174 aaKnown RBP11.01□□□□□ -0.65
USP4-202ENST00000351842 QSER1Q2KHR3 1735 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 CCDC171Q6TFL3 1326 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 CTDSPL2Q05D32 466 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 COL9A3Q14050 684 aaPredicted RBP11.01□□□□□ -0.65
USP4-202ENST00000351842 DLGAP5Q15398 846 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 LRRFIP1Q32MZ4 808 aaKnown RBP11.01□□□□□ -0.65
USP4-202ENST00000351842 RSBN1LQ6PCB5 846 aaPredicted RBP11.01□□□□□ -0.65
USP4-202ENST00000351842 ZGPATQ8N5A5 531 aaKnown RBP11.01□□□□□ -0.65
USP4-202ENST00000351842 RTFDC1Q9BY42 306 aaPredicted RBP11.01□□□□□ -0.65
USP4-202ENST00000351842 DAGLAQ9Y4D2 1042 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 KDM4AO75164 1064 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 FGD1P98174 961 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 ZMYM1Q5SVZ6 1142 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 TBC1D22AQ8WUA7 517 aa11.01□□□□□ -0.65
USP4-202ENST00000351842 LRP5O75197 1615 aa11□□□□□ -0.65
USP4-202ENST00000351842 HSPD1P10809 573 aaKnown RBP11□□□□□ -0.65
USP4-202ENST00000351842 ISY1Q9ULR0 285 aaKnown RBP11□□□□□ -0.65
USP4-202ENST00000351842 SEMA3EO15041 775 aa11□□□□□ -0.65
USP4-202ENST00000351842 ZNF408Q9H9D4 720 aa11□□□□□ -0.65
USP4-202ENST00000351842 AK9Q5TCS8 1911 aa11□□□□□ -0.65
USP4-202ENST00000351842 USP17L12C9JPN9 530 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 USP17L21D6R901 530 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 HIP1O00291 1037 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 POLR3DP05423 398 aaPredicted RBP10.99□□□□□ -0.65
USP4-202ENST00000351842 SAMD1Q6SPF0 538 aaPredicted RBP10.99□□□□□ -0.65
USP4-202ENST00000351842 CDAN1Q8IWY9 1227 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 SLC44A5Q8NCS7 719 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 BAG3O95817 575 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 FGAP02671 866 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 ZFYP08048 801 aaPredicted RBP10.99□□□□□ -0.65
USP4-202ENST00000351842 RASEFQ8IZ41 740 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 ZKSCAN3Q9BRR0 538 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 CCDC88AQ3V6T2 1871 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 AKAP11Q9UKA4 1901 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 TNIP1Q15025 636 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 DPY19L2Q6NUT2 758 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 MIGA2Q7L4E1 593 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 ZFPM1Q8IX07 1006 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 DYNLL2Q96FJ2 89 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 DDRGK1Q96HY6 314 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 STRBPQ96SI9 672 aaKnown RBP10.99□□□□□ -0.65
USP4-202ENST00000351842 HDAC9Q9UKV0 1011 aa10.99□□□□□ -0.65
USP4-202ENST00000351842 TCRBV5S4A2TA0A5A2 114 aa10.98□□□□□ -0.65
USP4-202ENST00000351842 TRPM4Q8TD43 1214 aa10.98□□□□□ -0.65
USP4-202ENST00000351842 ZNF512BQ96KM6 892 aaPredicted RBP10.98□□□□□ -0.65
USP4-202ENST00000351842 JAKMIP1Q96N16 626 aaKnown RBP10.98□□□□□ -0.65
USP4-202ENST00000351842 H7C1D1 291 aa10.98□□□□□ -0.65
USP4-202ENST00000351842 GRIN3BO60391 1043 aa10.98□□□□□ -0.65
USP4-202ENST00000351842 LDHCP07864 332 aa10.98□□□□□ -0.65
USP4-202ENST00000351842 LMOD1P29536 600 aaPredicted RBP10.98□□□□□ -0.65
USP4-202ENST00000351842 ATP2B2Q01814 1243 aa10.98□□□□□ -0.65
USP4-202ENST00000351842 UBE3CQ15386 1083 aa10.98□□□□□ -0.65
USP4-202ENST00000351842 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.98□□□□□ -0.65
USP4-202ENST00000351842 CRNKL1Q9BZJ0 848 aaKnown RBP10.98□□□□□ -0.65
USP4-202ENST00000351842 MROH7-TTC4A0A0A0MT08 1334 aa10.98□□□□□ -0.65
USP4-202ENST00000351842 ADCK5Q3MIX3 580 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 USP26Q9BXU7 913 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 EPB41L4AQ9HCS5 686 aaPredicted RBP10.97□□□□□ -0.65
USP4-202ENST00000351842 POTEIP0CG38 1075 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 POTEJP0CG39 1038 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 CASTP20810 708 aaKnown RBP10.97□□□□□ -0.65
USP4-202ENST00000351842 MCCP23508 829 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 GSTO1P78417 241 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 CDC42EP5Q6NZY7 148 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 IFNL3Q8IZI9 196 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 LSG1Q9H089 658 aaKnown RBP10.97□□□□□ -0.65
USP4-202ENST00000351842 MYOZ2Q9NPC6 264 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 ZNF213O14771 459 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 RANBP6O60518 1105 aaKnown RBP10.97□□□□□ -0.65
USP4-202ENST00000351842 NEK4P51957 841 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 NACAP1Q9BZK3 213 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 TMEM39BQ9GZU3 492 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 DDX4Q9NQI0 724 aaKnown RBP10.97□□□□□ -0.65
USP4-202ENST00000351842 HELLSQ9NRZ9 838 aa10.97□□□□□ -0.65
USP4-202ENST00000351842 FAM205AQ6ZU69 1335 aa10.96□□□□□ -0.65
USP4-202ENST00000351842 ZKSCAN1P17029 563 aaPredicted RBP10.96□□□□□ -0.65
USP4-202ENST00000351842 CREB3L3Q68CJ9 461 aa10.96□□□□□ -0.65
USP4-202ENST00000351842 C15orf52Q6ZUT6 534 aaKnown RBP10.96□□□□□ -0.65
USP4-202ENST00000351842 TMOD2Q9NZR1 351 aa10.96□□□□□ -0.65
USP4-202ENST00000351842 GSG1L2A8MUP6 293 aa10.96□□□□□ -0.66
USP4-202ENST00000351842 MPHOSPH10O00566 681 aaKnown RBP10.96□□□□□ -0.66
USP4-202ENST00000351842 WNT10BO00744 389 aa10.96□□□□□ -0.66
USP4-202ENST00000351842 CYP21A2P08686 494 aa10.96□□□□□ -0.66
USP4-202ENST00000351842 VIL1P09327 827 aaKnown RBP10.96□□□□□ -0.66
USP4-202ENST00000351842 FMR1Q06787 632 aaKnown RBP eCLIP10.96□□□□□ -0.66
USP4-202ENST00000351842 FAM47AQ5JRC9 791 aa10.96□□□□□ -0.66
USP4-202ENST00000351842 ANGEL2Q5VTE6 544 aaKnown RBP10.96□□□□□ -0.66
USP4-202ENST00000351842 APOBEC3HQ6NTF7 200 aaKnown RBP10.96□□□□□ -0.66
USP4-202ENST00000351842 RIOK1Q9BRS2 568 aaKnown RBP10.96□□□□□ -0.66
USP4-202ENST00000351842 MYO1BO43795 1136 aa10.96□□□□□ -0.66
USP4-202ENST00000351842 PLCD1P51178 756 aa10.96□□□□□ -0.66
USP4-202ENST00000351842 KIF4BQ2VIQ3 1234 aa10.96□□□□□ -0.66
USP4-202ENST00000351842 CLEC10AQ8IUN9 316 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms