RNA–Protein interactions for RNA: ENST00000351288.10

SMPD4-201, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2 BASIC

Gene SMPD4, Length 3,661 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-201ENST00000351288 TSPY2A6NKD2 308 aa12.06□□□□□ -0.48
SMPD4-201ENST00000351288 DYNLL1P63167 89 aaKnown RBP12.06□□□□□ -0.48
SMPD4-201ENST00000351288 WTAPQ15007 396 aa12.06□□□□□ -0.48
SMPD4-201ENST00000351288 TRMT1Q9NXH9 659 aaKnown RBP12.06□□□□□ -0.48
SMPD4-201ENST00000351288 SAP30BPQ9UHR5 308 aaKnown RBP12.06□□□□□ -0.48
SMPD4-201ENST00000351288 BAZ2BQ9UIF8 2168 aaKnown RBP12.06□□□□□ -0.48
SMPD4-201ENST00000351288 CRYBG1Q9Y4K1 1723 aa12.06□□□□□ -0.48
SMPD4-201ENST00000351288 SMIM22K7EJ46 135 aa12.06□□□□□ -0.48
SMPD4-201ENST00000351288 RPS8P62241 208 aaKnown RBP12.06□□□□□ -0.48
SMPD4-201ENST00000351288 ZSCAN29Q8IWY8 852 aaPredicted RBP12.06□□□□□ -0.48
SMPD4-201ENST00000351288 UBN2Q6ZU65 1347 aa12.06□□□□□ -0.48
SMPD4-201ENST00000351288 PICALMQ13492 652 aa12.06□□□□□ -0.48
SMPD4-201ENST00000351288 PARP10Q53GL7 1025 aa12.06□□□□□ -0.48
SMPD4-201ENST00000351288 MCM9Q9NXL9 1143 aa12.06□□□□□ -0.48
SMPD4-201ENST00000351288 CLIP2Q9UDT6 1046 aa12.06□□□□□ -0.48
SMPD4-201ENST00000351288 SMC2O95347 1197 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 NAA30Q147X3 362 aaPredicted RBP12.05□□□□□ -0.48
SMPD4-201ENST00000351288 FAM47AQ5JRC9 791 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 CNBD1Q8NA66 436 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 DSCC1Q9BVC3 393 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 DDX19AQ9NUU7 478 aaKnown RBP12.05□□□□□ -0.48
SMPD4-201ENST00000351288 COL5A2P05997 1499 aaPredicted RBP12.05□□□□□ -0.48
SMPD4-201ENST00000351288 KIF28PB7ZC32 967 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 MARCH6O60337 910 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 TBC1D9BQ66K14 1250 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 HOMER1Q86YM7 354 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 CDCA7Q9BWT1 371 aaPredicted RBP12.05□□□□□ -0.48
SMPD4-201ENST00000351288 PCDHA7Q9UN72 937 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 KCNJ14Q9UNX9 436 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 CARMIL3Q8ND23 1372 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 NDUFA8P51970 172 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 ANTXR2P58335 489 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 AOPEPQ8N6M6 819 aa12.05□□□□□ -0.48
SMPD4-201ENST00000351288 CPDO75976 1380 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 EP400Q96L91 3159 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 ARFGEF2Q9Y6D5 1785 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 LCORLQ8N3X6 602 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 SMARCC2Q8TAQ2 1214 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 IQCA1Q86XH1 822 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 TBC1D10CQ8IV04 446 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 CACTINQ8WUQ7 758 aaKnown RBP12.04□□□□□ -0.48
SMPD4-201ENST00000351288 RIPOR2Q9Y4F9 1068 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 ELP1O95163 1332 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 CDK11BP21127 795 aaKnown RBP12.04□□□□□ -0.48
SMPD4-201ENST00000351288 SSRP1Q08945 709 aaKnown RBP12.04□□□□□ -0.48
SMPD4-201ENST00000351288 CYB5R4Q7L1T6 521 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 IFNL3Q8IZI9 196 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 KIAA1524Q8TCG1 905 aa12.04□□□□□ -0.48
SMPD4-201ENST00000351288 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.04□□□□□ -0.48
SMPD4-201ENST00000351288 V9GYY5 206 aaPredicted RBP12.04□□□□□ -0.48
SMPD4-201ENST00000351288 CIAO1O76071 339 aa12.03□□□□□ -0.48
SMPD4-201ENST00000351288 HIBADHP31937 336 aaKnown RBP12.03□□□□□ -0.48
SMPD4-201ENST00000351288 ZNF75DP51815 510 aa12.03□□□□□ -0.48
SMPD4-201ENST00000351288 IKQ13123 557 aaPredicted RBP12.03□□□□□ -0.48
SMPD4-201ENST00000351288 DHX8Q14562 1220 aaKnown RBP12.03□□□□□ -0.48
SMPD4-201ENST00000351288 NKX1-1Q15270 411 aaPredicted RBP12.03□□□□□ -0.48
SMPD4-201ENST00000351288 UTRNP46939 3433 aa12.03□□□□□ -0.48
SMPD4-201ENST00000351288 SPATA31A1Q5TZJ5 1347 aa12.03□□□□□ -0.48
SMPD4-201ENST00000351288 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.03□□□□□ -0.48
SMPD4-201ENST00000351288 GOLGA6L6A8MZA4 724 aa12.03□□□□□ -0.48
SMPD4-201ENST00000351288 USP17L12C9JPN9 530 aa12.03□□□□□ -0.48
SMPD4-201ENST00000351288 USP17L21D6R901 530 aa12.03□□□□□ -0.48
SMPD4-201ENST00000351288 RIOK3O14730 519 aaKnown RBP12.03□□□□□ -0.48
SMPD4-201ENST00000351288 KLHL10Q6JEL2 608 aa12.03□□□□□ -0.48
SMPD4-201ENST00000351288 ZSCAN16Q9H4T2 348 aaPredicted RBP12.03□□□□□ -0.48
SMPD4-201ENST00000351288 ANGEL1Q9UNK9 670 aaKnown RBP12.03□□□□□ -0.48
SMPD4-201ENST00000351288 MPHOSPH10O00566 681 aaKnown RBP12.02□□□□□ -0.48
SMPD4-201ENST00000351288 CDKL5O76039 1030 aa12.02□□□□□ -0.48
SMPD4-201ENST00000351288 EIF5P55010 431 aaKnown RBP12.02□□□□□ -0.48
SMPD4-201ENST00000351288 EIF6P56537 245 aaKnown RBP12.02□□□□□ -0.48
SMPD4-201ENST00000351288 SNW1Q13573 536 aaKnown RBP12.02□□□□□ -0.48
SMPD4-201ENST00000351288 RTN1Q16799 776 aa12.02□□□□□ -0.48
SMPD4-201ENST00000351288 UBE2Q2Q8WVN8 375 aa12.02□□□□□ -0.48
SMPD4-201ENST00000351288 UIMC1Q96RL1 719 aa12.02□□□□□ -0.48
SMPD4-201ENST00000351288 QTRT2Q9H974 415 aaKnown RBP12.02□□□□□ -0.48
SMPD4-201ENST00000351288 STRCP1A6NGW2 1772 aa12.02□□□□□ -0.48
SMPD4-201ENST00000351288 MROH5Q6ZUA9 1318 aa12.02□□□□□ -0.48
SMPD4-201ENST00000351288 USP27XA6NNY8 438 aa12.02□□□□□ -0.49
SMPD4-201ENST00000351288 CLIC6Q96NY7 704 aa12.02□□□□□ -0.49
SMPD4-201ENST00000351288 HPS5Q9UPZ3 1129 aa12.02□□□□□ -0.49
SMPD4-201ENST00000351288 ALS2Q96Q42 1657 aa12.02□□□□□ -0.49
SMPD4-201ENST00000351288 JCADQ9P266 1359 aa12.02□□□□□ -0.49
SMPD4-201ENST00000351288 SPDYE4A6NLX3 237 aa12.02□□□□□ -0.49
SMPD4-201ENST00000351288 UFL1O94874 794 aa12.02□□□□□ -0.49
SMPD4-201ENST00000351288 ADD2P35612 726 aa12.02□□□□□ -0.49
SMPD4-201ENST00000351288 DPCR1Q3MIW9 517 aa12.02□□□□□ -0.49
SMPD4-201ENST00000351288 LINC00116Q8NCU8 138 aa12.02□□□□□ -0.49
SMPD4-201ENST00000351288 TPD52L1Q16890 204 aaPredicted RBP12.01□□□□□ -0.49
SMPD4-201ENST00000351288 IFIT1BQ5T764 474 aaKnown RBP12.01□□□□□ -0.49
SMPD4-201ENST00000351288 NBPF3Q9H094 633 aa12.01□□□□□ -0.49
SMPD4-201ENST00000351288 PHRF1Q9P1Y6 1649 aaKnown RBP12.01□□□□□ -0.49
SMPD4-201ENST00000351288 SLC3A2P08195 630 aaKnown RBP12.01□□□□□ -0.49
SMPD4-201ENST00000351288 CDC27P30260 824 aa12.01□□□□□ -0.49
SMPD4-201ENST00000351288 DIXDC1Q155Q3 683 aa12.01□□□□□ -0.49
SMPD4-201ENST00000351288 C3orf67Q6ZVT6 689 aa12.01□□□□□ -0.49
SMPD4-201ENST00000351288 SEPT12Q8IYM1 358 aa12.01□□□□□ -0.49
SMPD4-201ENST00000351288 TRIM34Q9BYJ4 488 aa12.01□□□□□ -0.49
SMPD4-201ENST00000351288 XBP1P17861 261 aa12.01□□□□□ -0.49
SMPD4-201ENST00000351288 CTCFLQ8NI51 663 aaPredicted RBP12.01□□□□□ -0.49
SMPD4-201ENST00000351288 RCOR1Q9UKL0 485 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms