RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ERCC6LQ2NKX8 1250 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 CCDC158Q5M9N0 1113 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 FSIP1Q8NA03 581 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 BCL11BQ9C0K0 894 aaPredicted RBP18.35■□□□□ 0.53
HMGA1-202ENST00000347617 DNAI1Q9UI46 699 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 MYH3P11055 1940 aa18.34■□□□□ 0.53
HMGA1-202ENST00000347617 GOLGA6L9A6NEM1 432 aa18.34■□□□□ 0.53
HMGA1-202ENST00000347617 CBFA2T2O43439 604 aa18.34■□□□□ 0.53
HMGA1-202ENST00000347617 ADALQ6DHV7 355 aa18.34■□□□□ 0.53
HMGA1-202ENST00000347617 Q6ZUG5 572 aa18.34■□□□□ 0.53
HMGA1-202ENST00000347617 GOLPH3LQ9H4A5 285 aa18.34■□□□□ 0.53
HMGA1-202ENST00000347617 TLR7Q9NYK1 1049 aaKnown RBP18.34■□□□□ 0.53
HMGA1-202ENST00000347617 ORC3Q9UBD5 711 aaPredicted RBP18.34■□□□□ 0.53
HMGA1-202ENST00000347617 SBF2Q86WG5 1849 aa18.33■□□□□ 0.53
HMGA1-202ENST00000347617 IKBKBO14920 756 aa18.33■□□□□ 0.53
HMGA1-202ENST00000347617 LRRC24Q50LG9 513 aa18.33■□□□□ 0.53
HMGA1-202ENST00000347617 ARHGAP29Q52LW3 1261 aa18.33■□□□□ 0.53
HMGA1-202ENST00000347617 SUSD4Q5VX71 490 aa18.33■□□□□ 0.53
HMGA1-202ENST00000347617 SYT10Q6XYQ8 523 aa18.33■□□□□ 0.53
HMGA1-202ENST00000347617 FMR1NBQ8N0W7 255 aaPredicted RBP18.33■□□□□ 0.53
HMGA1-202ENST00000347617 IPO4Q8TEX9 1081 aaKnown RBP18.33■□□□□ 0.53
HMGA1-202ENST00000347617 RTEL1Q9NZ71 1219 aa18.33■□□□□ 0.53
HMGA1-202ENST00000347617 RTL9Q8NET4 1388 aa18.33■□□□□ 0.52
HMGA1-202ENST00000347617 LY75O60449 1722 aa18.33■□□□□ 0.52
HMGA1-202ENST00000347617 BCORQ6W2J9 1755 aa18.33■□□□□ 0.52
HMGA1-202ENST00000347617 LRRFIP1Q32MZ4 808 aaKnown RBP18.32■□□□□ 0.52
HMGA1-202ENST00000347617 TAF7LQ5H9L4 462 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 NSUN7Q8NE18 718 aaKnown RBP18.32■□□□□ 0.52
HMGA1-202ENST00000347617 MNS1Q8NEH6 495 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 HAUS7Q99871 368 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 RIPOR2Q9Y4F9 1068 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 ZSCAN12O43309 604 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 ITGA6P23229 1130 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 PLA2G4AP47712 749 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 TMC6Q7Z403 805 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 ZNF594Q96JF6 807 aaPredicted RBP18.32■□□□□ 0.52
HMGA1-202ENST00000347617 DBNDD2Q9BQY9 259 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 UBXN6Q9BZV1 441 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 BOLA2Q9H3K6 86 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 CWC15Q9P013 229 aaKnown RBP18.32■□□□□ 0.52
HMGA1-202ENST00000347617 KIAA1468Q9P260 1216 aa18.32■□□□□ 0.52
HMGA1-202ENST00000347617 ERICH4A6NGS2 130 aa18.31■□□□□ 0.52
HMGA1-202ENST00000347617 NLRP12P59046 1061 aa18.31■□□□□ 0.52
HMGA1-202ENST00000347617 JAKMIP3Q5VZ66 844 aa18.31■□□□□ 0.52
HMGA1-202ENST00000347617 FAM196AQ6ZSG2 479 aa18.31■□□□□ 0.52
HMGA1-202ENST00000347617 KCNG4Q8TDN1 519 aa18.31■□□□□ 0.52
HMGA1-202ENST00000347617 TCEANC2Q96MN5 208 aa18.31■□□□□ 0.52
HMGA1-202ENST00000347617 SDF4Q9BRK5 362 aa18.31■□□□□ 0.52
HMGA1-202ENST00000347617 AGXT2Q9BYV1 514 aa18.31■□□□□ 0.52
HMGA1-202ENST00000347617 NARFQ9UHQ1 456 aa18.31■□□□□ 0.52
HMGA1-202ENST00000347617 CCNL1Q9UK58 526 aaPredicted RBP18.31■□□□□ 0.52
HMGA1-202ENST00000347617 NIP7Q9Y221 180 aaKnown RBP eCLIP18.31■□□□□ 0.52
HMGA1-202ENST00000347617 ZNF609O15014 1411 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 TADA3O75528 432 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 SMC2O95347 1197 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 YEATS4O95619 227 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 NTSR2O95665 410 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 ME1P48163 572 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 SCRN1Q12765 414 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 ARMCX5Q6P1M9 558 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 DHX32Q7L7V1 743 aaKnown RBP18.3■□□□□ 0.52
HMGA1-202ENST00000347617 PTF1AQ7RTS3 328 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 HOMER1Q86YM7 354 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 SYNE4Q8N205 404 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 USP28Q96RU2 1077 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 MPHOSPH8Q99549 860 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 PUS3Q9BZE2 481 aaKnown RBP18.3■□□□□ 0.52
HMGA1-202ENST00000347617 XPO4Q9C0E2 1151 aaKnown RBP18.3■□□□□ 0.52
HMGA1-202ENST00000347617 GREM2Q9H772 168 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 SALL1Q9NSC2 1324 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 HNRNPH2P55795 449 aaKnown RBP18.3■□□□□ 0.52
HMGA1-202ENST00000347617 LDHAL6AQ6ZMR3 332 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 PSD3Q9NYI0 1048 aa18.3■□□□□ 0.52
HMGA1-202ENST00000347617 ABCC12Q96J65 1359 aa18.29■□□□□ 0.52
HMGA1-202ENST00000347617 A0A1B0GUL7 405 aa18.29■□□□□ 0.52
HMGA1-202ENST00000347617 PTPDC1A2A3K4 754 aa18.29■□□□□ 0.52
HMGA1-202ENST00000347617 DTNBO60941 627 aa18.29■□□□□ 0.52
HMGA1-202ENST00000347617 ZNF589Q86UQ0 364 aaPredicted RBP18.29■□□□□ 0.52
HMGA1-202ENST00000347617 GPR161Q8N6U8 529 aaKnown RBP18.29■□□□□ 0.52
HMGA1-202ENST00000347617 ZNF274Q96GC6 653 aaPredicted RBP18.29■□□□□ 0.52
HMGA1-202ENST00000347617 IFNKQ9P0W0 207 aa18.29■□□□□ 0.52
HMGA1-202ENST00000347617 TIMM10P62072 90 aa18.28■□□□□ 0.52
HMGA1-202ENST00000347617 MCMDC2Q4G0Z9 681 aa18.28■□□□□ 0.52
HMGA1-202ENST00000347617 SLC10A5Q5PT55 438 aa18.28■□□□□ 0.52
HMGA1-202ENST00000347617 ZNF512BQ96KM6 892 aaPredicted RBP18.28■□□□□ 0.52
HMGA1-202ENST00000347617 NEUROD6Q96NK8 337 aa18.28■□□□□ 0.52
HMGA1-202ENST00000347617 RTCBQ9Y3I0 505 aaKnown RBP18.28■□□□□ 0.52
HMGA1-202ENST00000347617 CCDC152Q4G0S7 254 aa18.27■□□□□ 0.52
HMGA1-202ENST00000347617 ZNF772Q68DY9 489 aaPredicted RBP18.27■□□□□ 0.52
HMGA1-202ENST00000347617 FBXL16Q8N461 479 aa18.27■□□□□ 0.52
HMGA1-202ENST00000347617 DDX11Q96FC9 970 aa18.27■□□□□ 0.52
HMGA1-202ENST00000347617 SPEF2Q9C093 1822 aa18.27■□□□□ 0.52
HMGA1-202ENST00000347617 LAMB2P55268 1798 aa18.27■□□□□ 0.52
HMGA1-202ENST00000347617 MROH5Q6ZUA9 1318 aa18.27■□□□□ 0.52
HMGA1-202ENST00000347617 TUBB4BP68371 445 aa18.27■□□□□ 0.51
HMGA1-202ENST00000347617 BRAPQ7Z569 592 aa18.27■□□□□ 0.51
HMGA1-202ENST00000347617 TMX1Q9H3N1 280 aa18.27■□□□□ 0.51
HMGA1-202ENST00000347617 POLR3EQ9NVU0 708 aa18.27■□□□□ 0.51
HMGA1-202ENST00000347617 PCDHA7Q9UN72 937 aa18.27■□□□□ 0.51
HMGA1-202ENST00000347617 TAF6LQ9Y6J9 622 aa18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms