RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 CREBRFQ8IUR6 639 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 ARHGAP6O43182 974 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 APPP05067 770 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 SMC1AQ14683 1233 aaKnown RBP12.74□□□□□ -0.37
SYNE1-202ENST00000347037 TOGARAM2Q6ZUX3 1019 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 MICU3Q86XE3 530 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 SMARCE1Q969G3 411 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 FOXN1O15353 648 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 TATP17735 454 aaPredicted RBP12.74□□□□□ -0.37
SYNE1-202ENST00000347037 ANTXR2P58335 489 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 FAM193AP78312 1265 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 TRDNQ13061 729 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 LONRF3Q496Y0 759 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 KRBA2Q6ZNG9 492 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 ZBTB3Q9H5J0 574 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 DENND2AQ9ULE3 1009 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 ADORA1P30542 326 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 METAP2P50579 478 aaKnown RBP eCLIP12.74□□□□□ -0.37
SYNE1-202ENST00000347037 CCDC102BQ68D86 513 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 KRT40Q6A162 431 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 CC2D1AQ6P1N0 951 aaPredicted RBP12.74□□□□□ -0.37
SYNE1-202ENST00000347037 TRMT44Q8IYL2 757 aaKnown RBP12.74□□□□□ -0.37
SYNE1-202ENST00000347037 ARFGAP3Q9NP61 516 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 CEP126Q9P2H0 1117 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 ZNF330Q9Y3S2 320 aaPredicted RBP12.74□□□□□ -0.37
SYNE1-202ENST00000347037 PCDHA5Q9Y5H7 936 aa12.74□□□□□ -0.37
SYNE1-202ENST00000347037 OVOS2A0A0G2JMS6 1433 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 EYA2O00167 538 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 NFXL1Q6ZNB6 911 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 MB21D2Q8IYB1 491 aaPredicted RBP12.73□□□□□ -0.37
SYNE1-202ENST00000347037 PLBD2Q8NHP8 589 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 CCDC12Q8WUD4 166 aaPredicted RBP12.73□□□□□ -0.37
SYNE1-202ENST00000347037 PUS7LQ9H0K6 701 aaKnown RBP12.73□□□□□ -0.37
SYNE1-202ENST00000347037 TUBE1Q9UJT0 475 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 SLIT3O75094 1523 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 TBC1D8O95759 1140 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 PHKG2P15735 406 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 CASP7P55210 303 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 PDE4BQ07343 736 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 GPS2Q13227 327 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 TRIM29Q14134 588 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 ZNF827Q17R98 1081 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 PI16Q6UXB8 463 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 METTL16Q86W50 562 aaKnown RBP12.73□□□□□ -0.37
SYNE1-202ENST00000347037 MPHOSPH8Q99549 860 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 CWC25Q9NXE8 425 aaPredicted RBP12.73□□□□□ -0.37
SYNE1-202ENST00000347037 CDC27P30260 824 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 KCNH3Q9ULD8 1083 aa12.73□□□□□ -0.37
SYNE1-202ENST00000347037 CAPN2P17655 700 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 TTLL7Q6ZT98 887 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 LRP10Q7Z4F1 713 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 TXLNBQ8N3L3 684 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 ZFP91Q96JP5 570 aaPredicted RBP12.72□□□□□ -0.37
SYNE1-202ENST00000347037 MYL10Q9BUA6 226 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 PARD6BQ9BYG5 372 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 CABP4P57796 275 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 GPR161Q8N6U8 529 aaKnown RBP12.72□□□□□ -0.37
SYNE1-202ENST00000347037 DHX58Q96C10 678 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 LZTFL1Q9NQ48 299 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 INTS13Q9NVM9 706 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 ATP2B1P20020 1258 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 RAD51AP2Q09MP3 1159 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 TAF7LQ5H9L4 462 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 CPLX2Q6PUV4 134 aaKnown RBP12.72□□□□□ -0.37
SYNE1-202ENST00000347037 NFE2L3Q9Y4A8 694 aa12.72□□□□□ -0.37
SYNE1-202ENST00000347037 KDM6AO15550 1401 aaPredicted RBP12.71□□□□□ -0.37
SYNE1-202ENST00000347037 FOXP2O15409 715 aa12.71□□□□□ -0.37
SYNE1-202ENST00000347037 GPAA1O43292 621 aa12.71□□□□□ -0.37
SYNE1-202ENST00000347037 ZAP70P43403 619 aa12.71□□□□□ -0.37
SYNE1-202ENST00000347037 SCARF1Q14162 830 aa12.71□□□□□ -0.37
SYNE1-202ENST00000347037 FOXP4Q8IVH2 680 aaPredicted RBP12.71□□□□□ -0.37
SYNE1-202ENST00000347037 CPLX3Q8WVH0 158 aa12.71□□□□□ -0.37
SYNE1-202ENST00000347037 IRX2Q9BZI1 471 aaPredicted RBP12.71□□□□□ -0.37
SYNE1-202ENST00000347037 PUF60Q9UHX1 559 aaKnown RBP12.71□□□□□ -0.37
SYNE1-202ENST00000347037 LMAN1P49257 510 aa12.71□□□□□ -0.37
SYNE1-202ENST00000347037 IFNL2Q8IZJ0 200 aa12.71□□□□□ -0.37
SYNE1-202ENST00000347037 C19orf44Q9H6X5 657 aa12.71□□□□□ -0.37
SYNE1-202ENST00000347037 UBE2Q2LH0YL09 131 aa12.71□□□□□ -0.38
SYNE1-202ENST00000347037 MAP3K9P80192 1104 aa12.71□□□□□ -0.38
SYNE1-202ENST00000347037 FCHSD1Q86WN1 690 aa12.71□□□□□ -0.38
SYNE1-202ENST00000347037 TMEM139Q8IV31 216 aa12.71□□□□□ -0.38
SYNE1-202ENST00000347037 GOLGA1Q92805 767 aa12.71□□□□□ -0.38
SYNE1-202ENST00000347037 XAGE2Q96GT9 111 aa12.71□□□□□ -0.38
SYNE1-202ENST00000347037 TRIM34Q9BYJ4 488 aa12.71□□□□□ -0.38
SYNE1-202ENST00000347037 HPSEQ9Y251 543 aa12.71□□□□□ -0.38
SYNE1-202ENST00000347037 MRFAP1Q9Y605 127 aa12.71□□□□□ -0.38
SYNE1-202ENST00000347037 C5P01031 1676 aa12.71□□□□□ -0.38
SYNE1-202ENST00000347037 COL18A1P39060 1754 aa12.7□□□□□ -0.38
SYNE1-202ENST00000347037 H7C1W4 665 aa12.7□□□□□ -0.38
SYNE1-202ENST00000347037 MTF1Q14872 753 aa12.7□□□□□ -0.38
SYNE1-202ENST00000347037 RESP18Q5W5W9 173 aa12.7□□□□□ -0.38
SYNE1-202ENST00000347037 GRAMD1CQ8IYS0 662 aa12.7□□□□□ -0.38
SYNE1-202ENST00000347037 SENP2Q9HC62 589 aa12.7□□□□□ -0.38
SYNE1-202ENST00000347037 GPR108Q9NPR9 543 aa12.7□□□□□ -0.38
SYNE1-202ENST00000347037 AFDNP55196 1824 aaKnown RBP12.7□□□□□ -0.38
SYNE1-202ENST00000347037 RGPD5Q99666 1765 aa12.7□□□□□ -0.38
SYNE1-202ENST00000347037 GOLGA6L9A6NEM1 432 aa12.7□□□□□ -0.38
SYNE1-202ENST00000347037 PPP6R2O75170 966 aa12.7□□□□□ -0.38
SYNE1-202ENST00000347037 CDKL5O76039 1030 aa12.7□□□□□ -0.38
SYNE1-202ENST00000347037 CCDC57Q2TAC2 916 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms