RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 NDUFA8P51970 172 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 LCORLQ8N3X6 602 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 MRPS27Q92552 414 aaKnown RBP18■□□□□ 0.47
UPF3B-202ENST00000345865 NRBP1Q9UHY1 535 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 TAF1P21675 1872 aa18■□□□□ 0.47
UPF3B-202ENST00000345865 BCL9LQ86UU0 1499 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 PTGS1P23219 599 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 IGHMBP2P38935 993 aaKnown RBP17.99■□□□□ 0.47
UPF3B-202ENST00000345865 ZNF75DP51815 510 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 NTRK3Q16288 839 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 C3orf67Q6ZVT6 689 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 KIAA1524Q8TCG1 905 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 NAPBQ9H115 298 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 SPTLC3Q9NUV7 552 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 RTL9Q8NET4 1388 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 ECM29Q5VYK3 1845 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 NUTM2BA6NNL0 878 aaPredicted RBP17.99■□□□□ 0.47
UPF3B-202ENST00000345865 NUTM2EB1AL46 878 aaPredicted RBP17.99■□□□□ 0.47
UPF3B-202ENST00000345865 RANBP6O60518 1105 aaKnown RBP17.99■□□□□ 0.47
UPF3B-202ENST00000345865 STK38Q15208 465 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 BRAPQ7Z569 592 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 NUTM2AQ8IVF1 878 aaPredicted RBP17.99■□□□□ 0.47
UPF3B-202ENST00000345865 TMEM87BQ96K49 555 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 TRIM5Q9C035 493 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 IQSEC3Q9UPP2 1182 aaPredicted RBP17.99■□□□□ 0.47
UPF3B-202ENST00000345865 LAMB2P55268 1798 aa17.99■□□□□ 0.47
UPF3B-202ENST00000345865 A0A1W2PQ27 194 aa17.98■□□□□ 0.47
UPF3B-202ENST00000345865 A0A1W2PQ64 194 aa17.98■□□□□ 0.47
UPF3B-202ENST00000345865 A0A1W2PQD8 194 aa17.98■□□□□ 0.47
UPF3B-202ENST00000345865 YEATS4O95619 227 aa17.98■□□□□ 0.47
UPF3B-202ENST00000345865 SGMS1Q86VZ5 419 aa17.98■□□□□ 0.47
UPF3B-202ENST00000345865 ALG1Q9BT22 464 aa17.98■□□□□ 0.47
UPF3B-202ENST00000345865 CICQ96RK0 1608 aaPredicted RBP17.98■□□□□ 0.47
UPF3B-202ENST00000345865 SPTLC2O15270 562 aa17.98■□□□□ 0.47
UPF3B-202ENST00000345865 KCNQ4P56696 695 aa17.98■□□□□ 0.47
UPF3B-202ENST00000345865 STX1AQ16623 288 aa17.98■□□□□ 0.47
UPF3B-202ENST00000345865 TMEM67Q5HYA8 995 aa17.98■□□□□ 0.47
UPF3B-202ENST00000345865 TAOK2Q9UL54 1235 aa17.98■□□□□ 0.47
UPF3B-202ENST00000345865 BCORQ6W2J9 1755 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 ZBTB43O43298 467 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 SMIM5Q71RC9 77 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 CCDC186Q7Z3E2 898 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 ADGRA1Q86SQ6 560 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 MIGA1Q8NAN2 632 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 KCNG4Q8TDN1 519 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 UQCRHLA0A096LP55 91 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 CAVIN2O95810 425 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 UQCRHP07919 91 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 SF3A1Q15459 793 aaKnown RBP17.97■□□□□ 0.47
UPF3B-202ENST00000345865 AXDND1Q5T1B0 1012 aaPredicted RBP17.97■□□□□ 0.47
UPF3B-202ENST00000345865 AKNAD1Q5T1N1 836 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 ANO1Q5XXA6 986 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 KRT40Q6A162 431 aa17.97■□□□□ 0.47
UPF3B-202ENST00000345865 COL5A3P25940 1745 aaPredicted RBP17.96■□□□□ 0.47
UPF3B-202ENST00000345865 GOLGA6L6A8MZA4 724 aa17.96■□□□□ 0.47
UPF3B-202ENST00000345865 NFXL1Q6ZNB6 911 aa17.96■□□□□ 0.47
UPF3B-202ENST00000345865 VPS37DQ86XT2 251 aa17.96■□□□□ 0.47
UPF3B-202ENST00000345865 DHX40Q8IX18 779 aaKnown RBP17.96■□□□□ 0.47
UPF3B-202ENST00000345865 STK11IPQ8N1F8 1099 aa17.96■□□□□ 0.47
UPF3B-202ENST00000345865 SLC4A4Q9Y6R1 1079 aa17.96■□□□□ 0.47
UPF3B-202ENST00000345865 TIAM2Q8IVF5 1701 aa17.96■□□□□ 0.47
UPF3B-202ENST00000345865 IFIT3O14879 490 aaKnown RBP17.95■□□□□ 0.46
UPF3B-202ENST00000345865 WDHD1O75717 1129 aaPredicted RBP17.95■□□□□ 0.46
UPF3B-202ENST00000345865 LIFRP42702 1097 aa17.95■□□□□ 0.46
UPF3B-202ENST00000345865 LRMPQ12912 555 aa17.95■□□□□ 0.46
UPF3B-202ENST00000345865 ERFEQ4G0M1 354 aa17.95■□□□□ 0.46
UPF3B-202ENST00000345865 SYNE3Q6ZMZ3 975 aa17.95■□□□□ 0.46
UPF3B-202ENST00000345865 LINC00116Q8NCU8 138 aa17.95■□□□□ 0.46
UPF3B-202ENST00000345865 ZKSCAN3Q9BRR0 538 aa17.95■□□□□ 0.46
UPF3B-202ENST00000345865 PNPLA7Q6ZV29 1317 aa17.95■□□□□ 0.46
UPF3B-202ENST00000345865 GOLGA8AA7E2F4 631 aa17.95■□□□□ 0.46
UPF3B-202ENST00000345865 SMIM22K7EJ46 135 aa17.95■□□□□ 0.46
UPF3B-202ENST00000345865 TPM3P06753 285 aa17.95■□□□□ 0.46
UPF3B-202ENST00000345865 DNTTIP2Q5QJE6 756 aaKnown RBP17.95■□□□□ 0.46
UPF3B-202ENST00000345865 BARGINQ6ZT62 677 aa17.95■□□□□ 0.46
UPF3B-202ENST00000345865 GYG1P46976 350 aa17.94■□□□□ 0.46
UPF3B-202ENST00000345865 FBXW7Q969H0 707 aa17.94■□□□□ 0.46
UPF3B-202ENST00000345865 SDF4Q9BRK5 362 aa17.94■□□□□ 0.46
UPF3B-202ENST00000345865 LRP2BPQ9P2M1 347 aa17.94■□□□□ 0.46
UPF3B-202ENST00000345865 CDKL5O76039 1030 aa17.94■□□□□ 0.46
UPF3B-202ENST00000345865 MARCKSP29966 332 aaPredicted RBP17.94■□□□□ 0.46
UPF3B-202ENST00000345865 TDO2P48775 406 aa17.94■□□□□ 0.46
UPF3B-202ENST00000345865 CCDC144BQ3MJ40 725 aa17.94■□□□□ 0.46
UPF3B-202ENST00000345865 MFSD6Q6ZSS7 791 aa17.94■□□□□ 0.46
UPF3B-202ENST00000345865 STAG1Q8WVM7 1258 aa17.94■□□□□ 0.46
UPF3B-202ENST00000345865 COL1A1P02452 1464 aaPredicted RBP17.94■□□□□ 0.46
UPF3B-202ENST00000345865 MROH7-TTC4A0A0A0MT08 1334 aa17.94■□□□□ 0.46
UPF3B-202ENST00000345865 ZNF804BA4D1E1 1349 aa17.94■□□□□ 0.46
UPF3B-202ENST00000345865 A0A1B0GUL6 1792 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 CASZ1Q86V15 1759 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 IARSP41252 1262 aaKnown RBP17.93■□□□□ 0.46
UPF3B-202ENST00000345865 SLC39A14Q15043 492 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 RRP12Q5JTH9 1297 aaKnown RBP17.93■□□□□ 0.46
UPF3B-202ENST00000345865 SARM1Q6SZW1 724 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 PTF1AQ7RTS3 328 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.93■□□□□ 0.46
UPF3B-202ENST00000345865 DRC7Q8IY82 874 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 RGS22Q8NE09 1264 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 ANO10Q9NW15 660 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 SLC12A7Q9Y666 1083 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 160.7 ms