RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 KCNH3Q9ULD8 1083 aa13.71□□□□□ -0.21
USP1-201ENST00000339950 KNDC1Q76NI1 1749 aa13.71□□□□□ -0.22
USP1-201ENST00000339950 TMEM232C9JQI7 657 aa13.71□□□□□ -0.22
USP1-201ENST00000339950 SMIM22K7EJ46 135 aa13.71□□□□□ -0.22
USP1-201ENST00000339950 MCM7P33993 719 aa13.71□□□□□ -0.22
USP1-201ENST00000339950 FOXO4P98177 505 aa13.71□□□□□ -0.22
USP1-201ENST00000339950 GOLGA6L1Q8N7Z2 621 aa13.71□□□□□ -0.22
USP1-201ENST00000339950 SMARCE1Q969G3 411 aa13.71□□□□□ -0.22
USP1-201ENST00000339950 GDAP1L1Q96MZ0 367 aa13.71□□□□□ -0.22
USP1-201ENST00000339950 SERTAD1Q9UHV2 236 aa13.71□□□□□ -0.22
USP1-201ENST00000339950 PCDHA5Q9Y5H7 936 aa13.71□□□□□ -0.22
USP1-201ENST00000339950 NLRP5P59047 1200 aa13.7□□□□□ -0.22
USP1-201ENST00000339950 KIF4BQ2VIQ3 1234 aa13.7□□□□□ -0.22
USP1-201ENST00000339950 CYB5R4Q7L1T6 521 aa13.7□□□□□ -0.22
USP1-201ENST00000339950 TBC1D10CQ8IV04 446 aa13.7□□□□□ -0.22
USP1-201ENST00000339950 DRC1Q96MC2 740 aa13.7□□□□□ -0.22
USP1-201ENST00000339950 WTIPA6NIX2 430 aaPredicted RBP13.7□□□□□ -0.22
USP1-201ENST00000339950 MCM6Q14566 821 aa13.7□□□□□ -0.22
USP1-201ENST00000339950 ZNF219Q9P2Y4 722 aaPredicted RBP13.7□□□□□ -0.22
USP1-201ENST00000339950 NFE2L3Q9Y4A8 694 aa13.7□□□□□ -0.22
USP1-201ENST00000339950 CLSTN1O94985 981 aa13.7□□□□□ -0.22
USP1-201ENST00000339950 TPM1P09493 284 aa13.7□□□□□ -0.22
USP1-201ENST00000339950 CDC27P30260 824 aa13.69□□□□□ -0.22
USP1-201ENST00000339950 RFX5P48382 616 aaPredicted RBP13.69□□□□□ -0.22
USP1-201ENST00000339950 LINC00301Q8NCQ3 95 aa13.69□□□□□ -0.22
USP1-201ENST00000339950 PIGBQ92521 554 aa13.69□□□□□ -0.22
USP1-201ENST00000339950 VPS16Q9H269 839 aa13.69□□□□□ -0.22
USP1-201ENST00000339950 PLEKHA4Q9H4M7 779 aa13.69□□□□□ -0.22
USP1-201ENST00000339950 F8W031 263 aaPredicted RBP13.69□□□□□ -0.22
USP1-201ENST00000339950 GUCY1A2P33402 732 aa13.69□□□□□ -0.22
USP1-201ENST00000339950 TSR1Q2NL82 804 aaKnown RBP13.69□□□□□ -0.22
USP1-201ENST00000339950 RCOR1Q9UKL0 485 aa13.69□□□□□ -0.22
USP1-201ENST00000339950 KIF20BQ96Q89 1820 aa13.69□□□□□ -0.22
USP1-201ENST00000339950 XBP1P17861 261 aa13.69□□□□□ -0.22
USP1-201ENST00000339950 NAA16Q6N069 864 aaPredicted RBP13.69□□□□□ -0.22
USP1-201ENST00000339950 DPF2Q92785 391 aa13.69□□□□□ -0.22
USP1-201ENST00000339950 DSCC1Q9BVC3 393 aa13.69□□□□□ -0.22
USP1-201ENST00000339950 EPB41L2O43491 1005 aaKnown RBP13.68□□□□□ -0.22
USP1-201ENST00000339950 SLU7O95391 586 aaKnown RBP13.68□□□□□ -0.22
USP1-201ENST00000339950 FDPSP14324 419 aaKnown RBP13.68□□□□□ -0.22
USP1-201ENST00000339950 TDRD7Q8NHU6 1098 aaKnown RBP13.68□□□□□ -0.22
USP1-201ENST00000339950 CEMIPQ8WUJ3 1361 aa13.68□□□□□ -0.22
USP1-201ENST00000339950 FAM205CA6NFA0 338 aa13.68□□□□□ -0.22
USP1-201ENST00000339950 TSPY2A6NKD2 308 aa13.68□□□□□ -0.22
USP1-201ENST00000339950 GPS2Q13227 327 aa13.68□□□□□ -0.22
USP1-201ENST00000339950 ADALQ6DHV7 355 aa13.68□□□□□ -0.22
USP1-201ENST00000339950 NOC3LQ8WTT2 800 aaKnown RBP13.68□□□□□ -0.22
USP1-201ENST00000339950 ZSWIM5Q9P217 1185 aa13.68□□□□□ -0.22
USP1-201ENST00000339950 COL15A1P39059 1388 aa13.68□□□□□ -0.22
USP1-201ENST00000339950 WDHD1O75717 1129 aaPredicted RBP13.68□□□□□ -0.22
USP1-201ENST00000339950 SEC31AO94979 1220 aaKnown RBP13.68□□□□□ -0.22
USP1-201ENST00000339950 RHOXF2BP0C7M4 288 aa13.68□□□□□ -0.22
USP1-201ENST00000339950 MATR3P43243 847 aaKnown RBP eCLIP13.68□□□□□ -0.22
USP1-201ENST00000339950 SMAP1Q8IYB5 467 aaPredicted RBP13.68□□□□□ -0.22
USP1-201ENST00000339950 NUP88Q99567 741 aaPredicted RBP13.68□□□□□ -0.22
USP1-201ENST00000339950 RHOXF2Q9BQY4 288 aa13.68□□□□□ -0.22
USP1-201ENST00000339950 RABEP2Q9H5N1 569 aa13.68□□□□□ -0.22
USP1-201ENST00000339950 H7C1W4 665 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 DYNLL1P63167 89 aaKnown RBP13.67□□□□□ -0.22
USP1-201ENST00000339950 GRIN1Q05586 938 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 TMCO3Q6UWJ1 677 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 USP49Q70CQ1 688 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 RASGRP4Q8TDF6 673 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 ARGLU1Q9NWB6 273 aaPredicted RBP13.67□□□□□ -0.22
USP1-201ENST00000339950 ZFYP08048 801 aaPredicted RBP13.67□□□□□ -0.22
USP1-201ENST00000339950 NCBP1Q09161 790 aaKnown RBP13.67□□□□□ -0.22
USP1-201ENST00000339950 AATFQ9NY61 560 aaKnown RBP eCLIP13.67□□□□□ -0.22
USP1-201ENST00000339950 G3V3G9 751 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 N4BP3O15049 544 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 DCAF8Q5TAQ9 597 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 APOA5Q6Q788 366 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 FUCA2Q9BTY2 467 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 BRMS1Q9HCU9 246 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 ANKIB1Q9P2G1 1089 aa13.67□□□□□ -0.22
USP1-201ENST00000339950 CASQ1P31415 396 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 IFIT1BQ5T764 474 aaKnown RBP13.66□□□□□ -0.22
USP1-201ENST00000339950 RRAGBQ5VZM2 374 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 IRX2Q9BZI1 471 aaPredicted RBP13.66□□□□□ -0.22
USP1-201ENST00000339950 MKNK2Q9HBH9 465 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 PCDH11XQ9BZA7 1347 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 PCDH11YQ9BZA8 1340 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 EIF6P56537 245 aaKnown RBP13.66□□□□□ -0.22
USP1-201ENST00000339950 MYL5Q02045 173 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 KIF23Q02241 960 aaPredicted RBP13.66□□□□□ -0.22
USP1-201ENST00000339950 IFNL3Q8IZI9 196 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 LCORLQ8N3X6 602 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 SPATA5Q8NB90 893 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 CAGE1Q8TC20 777 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 CPVLQ9H3G5 476 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 PAXBP1Q9Y5B6 917 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 IBSPP21815 317 aaPredicted RBP13.66□□□□□ -0.22
USP1-201ENST00000339950 OXER1Q8TDS5 423 aa13.66□□□□□ -0.22
USP1-201ENST00000339950 LLPHQ9BRT6 129 aaKnown RBP13.66□□□□□ -0.22
USP1-201ENST00000339950 SAP30BPQ9UHR5 308 aaKnown RBP13.66□□□□□ -0.22
USP1-201ENST00000339950 PDIA4P13667 645 aaKnown RBP13.65□□□□□ -0.22
USP1-201ENST00000339950 GYS2P54840 703 aa13.65□□□□□ -0.22
USP1-201ENST00000339950 GSDMDP57764 484 aa13.65□□□□□ -0.22
USP1-201ENST00000339950 FILIP1LQ4L180 1135 aa13.65□□□□□ -0.22
USP1-201ENST00000339950 CCDC102AQ96A19 550 aa13.65□□□□□ -0.22
USP1-201ENST00000339950 SAMSN1Q9NSI8 373 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms