RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TTLL12Q14166 644 aaPredicted RBP19.4■□□□□ 0.7
CLN3-201ENST00000333496 DZIP1Q86YF9 867 aaKnown RBP19.4■□□□□ 0.7
CLN3-201ENST00000333496 FAM163AQ96GL9 167 aaPredicted RBP19.4■□□□□ 0.7
CLN3-201ENST00000333496 DOCK2Q92608 1830 aa19.4■□□□□ 0.7
CLN3-201ENST00000333496 CYP2E1P05181 493 aaPredicted RBP19.4■□□□□ 0.7
CLN3-201ENST00000333496 SUPT20HL1Q3ZLR7 823 aa19.4■□□□□ 0.7
CLN3-201ENST00000333496 FKBP1CQ5VVH2 108 aa19.4■□□□□ 0.7
CLN3-201ENST00000333496 CRBNQ96SW2 442 aa19.4■□□□□ 0.7
CLN3-201ENST00000333496 ANGEL1Q9UNK9 670 aaKnown RBP19.4■□□□□ 0.7
CLN3-201ENST00000333496 PCDHB15Q9Y5E8 787 aa19.4■□□□□ 0.7
CLN3-201ENST00000333496 SLC10A3P09131 477 aa19.39■□□□□ 0.69
CLN3-201ENST00000333496 ZAP70P43403 619 aa19.39■□□□□ 0.69
CLN3-201ENST00000333496 TNNI2P48788 182 aa19.39■□□□□ 0.69
CLN3-201ENST00000333496 NOGQ13253 232 aa19.39■□□□□ 0.69
CLN3-201ENST00000333496 MAP3K11Q16584 847 aa19.39■□□□□ 0.69
CLN3-201ENST00000333496 LDLRAD1Q5T700 205 aa19.39■□□□□ 0.69
CLN3-201ENST00000333496 ARMC9Q7Z3E5 817 aa19.39■□□□□ 0.69
CLN3-201ENST00000333496 FAM83AQ86UY5 434 aa19.39■□□□□ 0.69
CLN3-201ENST00000333496 CLASRPQ8N2M8 674 aaKnown RBP19.39■□□□□ 0.69
CLN3-201ENST00000333496 CCDC102AQ96A19 550 aa19.39■□□□□ 0.69
CLN3-201ENST00000333496 NSUN4Q96CB9 384 aaKnown RBP19.39■□□□□ 0.69
CLN3-201ENST00000333496 RASAL3Q86YV0 1011 aa19.38■□□□□ 0.69
CLN3-201ENST00000333496 TMOD2Q9NZR1 351 aa19.38■□□□□ 0.69
CLN3-201ENST00000333496 CDK5RAP2Q96SN8 1893 aa19.38■□□□□ 0.69
CLN3-201ENST00000333496 MROH7-TTC4A0A0A0MT08 1334 aa19.37■□□□□ 0.69
CLN3-201ENST00000333496 FOXN1O15353 648 aa19.37■□□□□ 0.69
CLN3-201ENST00000333496 USP2O75604 605 aaPredicted RBP19.37■□□□□ 0.69
CLN3-201ENST00000333496 MAP2K1Q02750 393 aaPredicted RBP19.37■□□□□ 0.69
CLN3-201ENST00000333496 NFIAQ12857 509 aa19.37■□□□□ 0.69
CLN3-201ENST00000333496 USP40Q9NVE5 1235 aa19.37■□□□□ 0.69
CLN3-201ENST00000333496 NDUFB9Q9Y6M9 179 aa19.37■□□□□ 0.69
CLN3-201ENST00000333496 PPP1R12BO60237 982 aaPredicted RBP19.36■□□□□ 0.69
CLN3-201ENST00000333496 SLF2Q8IX21 1173 aa19.36■□□□□ 0.69
CLN3-201ENST00000333496 DCTPP1Q9H773 170 aa19.36■□□□□ 0.69
CLN3-201ENST00000333496 RAI14Q9P0K7 980 aa19.36■□□□□ 0.69
CLN3-201ENST00000333496 LRP2BPQ9P2M1 347 aa19.36■□□□□ 0.69
CLN3-201ENST00000333496 FAM198AQ9UFP1 575 aa19.36■□□□□ 0.69
CLN3-201ENST00000333496 LAMB1P07942 1786 aa19.36■□□□□ 0.69
CLN3-201ENST00000333496 GPR75-ASB3A0A0A6YYF3 556 aa19.36■□□□□ 0.69
CLN3-201ENST00000333496 BTDP43251 543 aa19.36■□□□□ 0.69
CLN3-201ENST00000333496 PIH1D3Q9NQM4 214 aaKnown RBP19.36■□□□□ 0.69
CLN3-201ENST00000333496 KIF23Q02241 960 aaPredicted RBP19.35■□□□□ 0.69
CLN3-201ENST00000333496 FAM151AQ8WW52 585 aa19.35■□□□□ 0.69
CLN3-201ENST00000333496 BCL11AQ9H165 835 aa19.35■□□□□ 0.69
CLN3-201ENST00000333496 RFX7Q2KHR2 1363 aa19.35■□□□□ 0.69
CLN3-201ENST00000333496 RPAP1Q9BWH6 1393 aaPredicted RBP19.35■□□□□ 0.69
CLN3-201ENST00000333496 SMARCA5O60264 1052 aaPredicted RBP19.34■□□□□ 0.69
CLN3-201ENST00000333496 TCP10Q12799 353 aa19.34■□□□□ 0.69
CLN3-201ENST00000333496 CLMNQ96JQ2 1002 aa19.34■□□□□ 0.69
CLN3-201ENST00000333496 IDI2Q9BXS1 227 aa19.34■□□□□ 0.69
CLN3-201ENST00000333496 LRRCC1Q9C099 1032 aa19.34■□□□□ 0.69
CLN3-201ENST00000333496 ANTXR1Q9H6X2 564 aa19.34■□□□□ 0.69
CLN3-201ENST00000333496 FOCADQ5VW36 1801 aa19.33■□□□□ 0.69
CLN3-201ENST00000333496 LDHCP07864 332 aa19.33■□□□□ 0.69
CLN3-201ENST00000333496 IFIT2P09913 472 aaKnown RBP19.33■□□□□ 0.69
CLN3-201ENST00000333496 RHBDL3P58872 404 aa19.33■□□□□ 0.69
CLN3-201ENST00000333496 ZFPM1Q8IX07 1006 aa19.33■□□□□ 0.69
CLN3-201ENST00000333496 WDHD1O75717 1129 aaPredicted RBP19.33■□□□□ 0.68
CLN3-201ENST00000333496 GSTO1P78417 241 aa19.33■□□□□ 0.68
CLN3-201ENST00000333496 CSRNP1Q96S65 589 aa19.33■□□□□ 0.68
CLN3-201ENST00000333496 IREB2P48200 963 aaKnown RBP19.32■□□□□ 0.68
CLN3-201ENST00000333496 RGS3P49796 1198 aa19.32■□□□□ 0.68
CLN3-201ENST00000333496 ADGRA1Q86SQ6 560 aa19.32■□□□□ 0.68
CLN3-201ENST00000333496 AIDAQ96BJ3 306 aa19.32■□□□□ 0.68
CLN3-201ENST00000333496 DDX4Q9NQI0 724 aaKnown RBP19.32■□□□□ 0.68
CLN3-201ENST00000333496 UNCXA6NJT0 531 aa19.31■□□□□ 0.68
CLN3-201ENST00000333496 NAA16Q6N069 864 aaPredicted RBP19.31■□□□□ 0.68
CLN3-201ENST00000333496 ANKRD13AQ8IZ07 590 aa19.31■□□□□ 0.68
CLN3-201ENST00000333496 SUPT16HQ9Y5B9 1047 aaKnown RBP19.31■□□□□ 0.68
CLN3-201ENST00000333496 MKRN3Q13064 507 aaKnown RBP19.3■□□□□ 0.68
CLN3-201ENST00000333496 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.3■□□□□ 0.68
CLN3-201ENST00000333496 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLN3-201ENST00000333496 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLN3-201ENST00000333496 SLC10A4Q96EP9 437 aa19.3■□□□□ 0.68
CLN3-201ENST00000333496 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.3■□□□□ 0.68
CLN3-201ENST00000333496 MYH7P12883 1935 aa19.3■□□□□ 0.68
CLN3-201ENST00000333496 IGSF3O75054 1194 aa19.29■□□□□ 0.68
CLN3-201ENST00000333496 ENTPD3O75355 529 aa19.29■□□□□ 0.68
CLN3-201ENST00000333496 HSPA8P11142 646 aaKnown RBP19.29■□□□□ 0.68
CLN3-201ENST00000333496 CTCFP49711 727 aaPredicted RBP19.29■□□□□ 0.68
CLN3-201ENST00000333496 SPRYD7Q5W111 196 aa19.29■□□□□ 0.68
CLN3-201ENST00000333496 MIGA2Q7L4E1 593 aa19.29■□□□□ 0.68
CLN3-201ENST00000333496 SH3BP5LQ7L8J4 393 aa19.29■□□□□ 0.68
CLN3-201ENST00000333496 IDH1O75874 414 aaKnown RBP19.29■□□□□ 0.68
CLN3-201ENST00000333496 COL13A1Q5TAT6 717 aaPredicted RBP19.29■□□□□ 0.68
CLN3-201ENST00000333496 BEGAINQ9BUH8 593 aa19.29■□□□□ 0.68
CLN3-201ENST00000333496 AATFQ9NY61 560 aaKnown RBP eCLIP19.29■□□□□ 0.68
CLN3-201ENST00000333496 CASP8AP2Q9UKL3 1982 aa19.28■□□□□ 0.68
CLN3-201ENST00000333496 ATRNL1Q5VV63 1379 aa19.28■□□□□ 0.68
CLN3-201ENST00000333496 GJA5P36382 358 aa19.28■□□□□ 0.68
CLN3-201ENST00000333496 LBX1P52954 281 aa19.28■□□□□ 0.68
CLN3-201ENST00000333496 PPP4CP60510 307 aa19.28■□□□□ 0.68
CLN3-201ENST00000333496 MAP3K9P80192 1104 aa19.28■□□□□ 0.68
CLN3-201ENST00000333496 PICALMQ13492 652 aa19.28■□□□□ 0.68
CLN3-201ENST00000333496 WNK4Q96J92 1243 aa19.28■□□□□ 0.68
CLN3-201ENST00000333496 TSKSQ9UJT2 592 aa19.28■□□□□ 0.68
CLN3-201ENST00000333496 DDTLA6NHG4 134 aaPredicted RBP19.27■□□□□ 0.68
CLN3-201ENST00000333496 MAP4K4O95819 1239 aaPredicted RBP19.27■□□□□ 0.68
CLN3-201ENST00000333496 ATP5JP18859 108 aa19.27■□□□□ 0.68
CLN3-201ENST00000333496 VGLL4Q14135 290 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms