RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PPP1R12BO60237 982 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-201ENST00000332345 SMARCA5O60264 1052 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-201ENST00000332345 HDAC1Q13547 482 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-201ENST00000332345 CDC42EP5Q6NZY7 148 aa17.09■□□□□ 0.33
LIMS1-201ENST00000332345 FAM83AQ86UY5 434 aa17.09■□□□□ 0.33
LIMS1-201ENST00000332345 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.09■□□□□ 0.33
LIMS1-201ENST00000332345 CAPNS2Q96L46 248 aa17.09■□□□□ 0.33
LIMS1-201ENST00000332345 ZBTB47Q9UFB7 747 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-201ENST00000332345 WDR33Q9C0J8 1336 aaKnown RBP17.09■□□□□ 0.33
LIMS1-201ENST00000332345 MROH7-TTC4A0A0A0MT08 1334 aa17.08■□□□□ 0.32
LIMS1-201ENST00000332345 GAKO14976 1311 aa17.08■□□□□ 0.32
LIMS1-201ENST00000332345 TTF1Q15361 905 aaPredicted RBP17.08■□□□□ 0.32
LIMS1-201ENST00000332345 NBPF12Q5TAG4 269 aaPredicted RBP17.08■□□□□ 0.32
LIMS1-201ENST00000332345 CYP4F22Q6NT55 531 aa17.08■□□□□ 0.32
LIMS1-201ENST00000332345 RGMBQ6NW40 437 aa17.08■□□□□ 0.32
LIMS1-201ENST00000332345 EXOC6Q8TAG9 804 aa17.08■□□□□ 0.32
LIMS1-201ENST00000332345 RWDD1Q9H446 243 aaPredicted RBP17.08■□□□□ 0.32
LIMS1-201ENST00000332345 PCNTO95613 3336 aa17.07■□□□□ 0.32
LIMS1-201ENST00000332345 GPR75-ASB3A0A0A6YYF3 556 aa17.07■□□□□ 0.32
LIMS1-201ENST00000332345 MAP4K4O95819 1239 aaPredicted RBP17.07■□□□□ 0.32
LIMS1-201ENST00000332345 ZNF157P51786 506 aaPredicted RBP17.07■□□□□ 0.32
LIMS1-201ENST00000332345 CACNB3P54284 484 aa17.07■□□□□ 0.32
LIMS1-201ENST00000332345 GRM1Q13255 1194 aa17.07■□□□□ 0.32
LIMS1-201ENST00000332345 NAA16Q6N069 864 aaPredicted RBP17.07■□□□□ 0.32
LIMS1-201ENST00000332345 CCDC102AQ96A19 550 aa17.07■□□□□ 0.32
LIMS1-201ENST00000332345 GCC1Q96CN9 775 aa17.07■□□□□ 0.32
LIMS1-201ENST00000332345 HOOK2Q96ED9 719 aa17.07■□□□□ 0.32
LIMS1-201ENST00000332345 NOL10Q9BSC4 688 aaKnown RBP17.07■□□□□ 0.32
LIMS1-201ENST00000332345 TMEM39BQ9GZU3 492 aa17.07■□□□□ 0.32
LIMS1-201ENST00000332345 UBE2Q2LH0YL09 131 aa17.06■□□□□ 0.32
LIMS1-201ENST00000332345 ATP5JP18859 108 aa17.06■□□□□ 0.32
LIMS1-201ENST00000332345 BTDP43251 543 aa17.06■□□□□ 0.32
LIMS1-201ENST00000332345 MAP3K12Q12852 859 aa17.06■□□□□ 0.32
LIMS1-201ENST00000332345 PRKG1Q13976 671 aa17.06■□□□□ 0.32
LIMS1-201ENST00000332345 TMED8Q6PL24 325 aaPredicted RBP17.06■□□□□ 0.32
LIMS1-201ENST00000332345 ZNF384Q8TF68 577 aa17.06■□□□□ 0.32
LIMS1-201ENST00000332345 FAM151AQ8WW52 585 aa17.06■□□□□ 0.32
LIMS1-201ENST00000332345 GPATCH3Q96I76 525 aa17.06■□□□□ 0.32
LIMS1-201ENST00000332345 PIH1D3Q9NQM4 214 aaKnown RBP17.06■□□□□ 0.32
LIMS1-201ENST00000332345 PAPPA2Q9BXP8 1791 aa17.05■□□□□ 0.32
LIMS1-201ENST00000332345 UNCXA6NJT0 531 aa17.05■□□□□ 0.32
LIMS1-201ENST00000332345 IDH1O75874 414 aaKnown RBP17.05■□□□□ 0.32
LIMS1-201ENST00000332345 BAG3O95817 575 aa17.05■□□□□ 0.32
LIMS1-201ENST00000332345 MAP2K2P36507 400 aa17.05■□□□□ 0.32
LIMS1-201ENST00000332345 MOB2Q70IA6 237 aa17.05■□□□□ 0.32
LIMS1-201ENST00000332345 TEPSINQ96N21 525 aa17.05■□□□□ 0.32
LIMS1-201ENST00000332345 ANGEL1Q9UNK9 670 aaKnown RBP17.05■□□□□ 0.32
LIMS1-201ENST00000332345 AK9Q5TCS8 1911 aa17.05■□□□□ 0.32
LIMS1-201ENST00000332345 IREB2P48200 963 aaKnown RBP17.04■□□□□ 0.32
LIMS1-201ENST00000332345 NOGQ13253 232 aa17.04■□□□□ 0.32
LIMS1-201ENST00000332345 MAP3K11Q16584 847 aa17.04■□□□□ 0.32
LIMS1-201ENST00000332345 ANKRD45Q5TZF3 282 aa17.04■□□□□ 0.32
LIMS1-201ENST00000332345 IDI2Q9BXS1 227 aa17.04■□□□□ 0.32
LIMS1-201ENST00000332345 BOLA2Q9H3K6 86 aa17.04■□□□□ 0.32
LIMS1-201ENST00000332345 ECHDC1Q9NTX5 307 aa17.04■□□□□ 0.32
LIMS1-201ENST00000332345 NDUFB9Q9Y6M9 179 aa17.04■□□□□ 0.32
LIMS1-201ENST00000332345 MYO5AQ9Y4I1 1855 aaKnown RBP17.03■□□□□ 0.32
LIMS1-201ENST00000332345 USP2O75604 605 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-201ENST00000332345 PLCG2P16885 1265 aa17.03■□□□□ 0.32
LIMS1-201ENST00000332345 MAP2K1Q02750 393 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-201ENST00000332345 TCP10Q12799 353 aa17.03■□□□□ 0.32
LIMS1-201ENST00000332345 LDLRAD1Q5T700 205 aa17.03■□□□□ 0.32
LIMS1-201ENST00000332345 DNAJC2Q99543 621 aaKnown RBP17.03■□□□□ 0.32
LIMS1-201ENST00000332345 HAUS7Q99871 368 aa17.03■□□□□ 0.32
LIMS1-201ENST00000332345 ANTXR1Q9H6X2 564 aa17.03■□□□□ 0.32
LIMS1-201ENST00000332345 GOLIM4O00461 696 aa17.02■□□□□ 0.32
LIMS1-201ENST00000332345 ENTPD3O75355 529 aa17.02■□□□□ 0.32
LIMS1-201ENST00000332345 CYP7A1P22680 504 aa17.02■□□□□ 0.32
LIMS1-201ENST00000332345 PPP4CP60510 307 aa17.02■□□□□ 0.32
LIMS1-201ENST00000332345 NFIAQ12857 509 aa17.02■□□□□ 0.32
LIMS1-201ENST00000332345 DCAF15Q66K64 600 aa17.02■□□□□ 0.32
LIMS1-201ENST00000332345 CERS3Q8IU89 383 aa17.02■□□□□ 0.32
LIMS1-201ENST00000332345 SLC10A4Q96EP9 437 aa17.02■□□□□ 0.32
LIMS1-201ENST00000332345 PAG1Q9NWQ8 432 aa17.02■□□□□ 0.32
LIMS1-201ENST00000332345 FAM198AQ9UFP1 575 aa17.02■□□□□ 0.32
LIMS1-201ENST00000332345 AOC2O75106 756 aa17.01■□□□□ 0.31
LIMS1-201ENST00000332345 RGS3P49796 1198 aa17.01■□□□□ 0.31
LIMS1-201ENST00000332345 RHBDL3P58872 404 aa17.01■□□□□ 0.31
LIMS1-201ENST00000332345 MAGEB6Q8N7X4 407 aa17.01■□□□□ 0.31
LIMS1-201ENST00000332345 FAM155AB1AL88 458 aaPredicted RBP17■□□□□ 0.31
LIMS1-201ENST00000332345 WDHD1O75717 1129 aaPredicted RBP17■□□□□ 0.31
LIMS1-201ENST00000332345 SLC10A3P09131 477 aa17■□□□□ 0.31
LIMS1-201ENST00000332345 IRX6P78412 446 aaPredicted RBP17■□□□□ 0.31
LIMS1-201ENST00000332345 SLC9C2Q5TAH2 1124 aa17■□□□□ 0.31
LIMS1-201ENST00000332345 ZSCAN29Q8IWY8 852 aaPredicted RBP17■□□□□ 0.31
LIMS1-201ENST00000332345 TEX11Q8IYF3 940 aa17■□□□□ 0.31
LIMS1-201ENST00000332345 ANKRD13AQ8IZ07 590 aa17■□□□□ 0.31
LIMS1-201ENST00000332345 BEGAINQ9BUH8 593 aa17■□□□□ 0.31
LIMS1-201ENST00000332345 AATFQ9NY61 560 aaKnown RBP eCLIP17■□□□□ 0.31
LIMS1-201ENST00000332345 FZD1Q9UP38 647 aa17■□□□□ 0.31
LIMS1-201ENST00000332345 RPAP1Q9BWH6 1393 aaPredicted RBP17■□□□□ 0.31
LIMS1-201ENST00000332345 TTC41PQ6P2S7 1318 aa16.99■□□□□ 0.31
LIMS1-201ENST00000332345 ERC2O15083 957 aa16.99■□□□□ 0.31
LIMS1-201ENST00000332345 MAP3K9P80192 1104 aa16.99■□□□□ 0.31
LIMS1-201ENST00000332345 PICALMQ13492 652 aa16.99■□□□□ 0.31
LIMS1-201ENST00000332345 CDAN1Q8IWY9 1227 aa16.99■□□□□ 0.31
LIMS1-201ENST00000332345 REM2Q8IYK8 340 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-201ENST00000332345 SH3RF3Q8TEJ3 882 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-201ENST00000332345 AIDAQ96BJ3 306 aa16.99■□□□□ 0.31
LIMS1-201ENST00000332345 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms