RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 H7C1W4 665 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 POLR3GO15318 223 aaPredicted RBP12.11□□□□□ -0.47
COL3A1-202ENST00000317840 MYL5Q02045 173 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 KRT40Q6A162 431 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 TRIM22Q8IYM9 498 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 NAPBQ9H115 298 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 LRP2BPQ9P2M1 347 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 ANGEL1Q9UNK9 670 aaKnown RBP12.11□□□□□ -0.47
COL3A1-202ENST00000317840 JAG2Q9Y219 1238 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 A0A0U1RQG5 324 aaPredicted RBP12.1□□□□□ -0.47
COL3A1-202ENST00000317840 G3V3G9 751 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 IGHMBP2P38935 993 aaKnown RBP12.1□□□□□ -0.47
COL3A1-202ENST00000317840 GNG11P61952 73 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 RBM6P78332 1123 aaKnown RBP12.1□□□□□ -0.47
COL3A1-202ENST00000317840 KMT5BQ4FZB7 885 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 DCAF8Q5TAQ9 597 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 ZBTB9Q96C00 473 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 PPP1R13BQ96KQ4 1090 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 TNS3Q68CZ2 1445 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 DHX8Q14562 1220 aaKnown RBP12.1□□□□□ -0.47
COL3A1-202ENST00000317840 TEX35Q5T0J7 233 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 POLR3EQ9NVU0 708 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 TDO2P48775 406 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 CPLX3Q8WVH0 158 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 ZSWIM4Q9H7M6 989 aa12.1□□□□□ -0.47
COL3A1-202ENST00000317840 DDX41Q9UJV9 622 aaKnown RBP12.1□□□□□ -0.47
COL3A1-202ENST00000317840 TOPAZ1Q8N9V7 1692 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 ZPR1O75312 459 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 CMA1P23946 247 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 SCARF1Q14162 830 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 BMS1Q14692 1282 aaKnown RBP12.09□□□□□ -0.47
COL3A1-202ENST00000317840 SART3Q15020 963 aaKnown RBP12.09□□□□□ -0.47
COL3A1-202ENST00000317840 RAI14Q9P0K7 980 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 ZSCAN12O43309 604 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 ITGA6P23229 1130 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 KIF23Q02241 960 aaPredicted RBP12.09□□□□□ -0.47
COL3A1-202ENST00000317840 KIF28PB7ZC32 967 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 SNAP23O00161 211 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 PES1O00541 588 aaKnown RBP12.09□□□□□ -0.47
COL3A1-202ENST00000317840 SYCP1Q15431 976 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 ILDR1Q86SU0 546 aaPredicted RBP12.09□□□□□ -0.47
COL3A1-202ENST00000317840 ZKSCAN3Q9BRR0 538 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 HEG1Q9ULI3 1381 aa12.09□□□□□ -0.47
COL3A1-202ENST00000317840 CCDC66A2RUB6 948 aa12.08□□□□□ -0.48
COL3A1-202ENST00000317840 SSRP1Q08945 709 aaKnown RBP12.08□□□□□ -0.48
COL3A1-202ENST00000317840 TCIRG1Q13488 830 aa12.08□□□□□ -0.48
COL3A1-202ENST00000317840 HLFQ16534 295 aa12.08□□□□□ -0.48
COL3A1-202ENST00000317840 E4F1Q66K89 784 aaPredicted RBP12.08□□□□□ -0.48
COL3A1-202ENST00000317840 ARMCX5Q6P1M9 558 aa12.08□□□□□ -0.48
COL3A1-202ENST00000317840 GPR108Q9NPR9 543 aa12.08□□□□□ -0.48
COL3A1-202ENST00000317840 KCNH3Q9ULD8 1083 aa12.08□□□□□ -0.48
COL3A1-202ENST00000317840 FANCLQ9NW38 375 aa12.08□□□□□ -0.48
COL3A1-202ENST00000317840 ETF1P62495 437 aaKnown RBP12.08□□□□□ -0.48
COL3A1-202ENST00000317840 NYAP1Q6ZVC0 841 aa12.08□□□□□ -0.48
COL3A1-202ENST00000317840 CARD6Q9BX69 1037 aa12.08□□□□□ -0.48
COL3A1-202ENST00000317840 RFX7Q2KHR2 1363 aa12.07□□□□□ -0.48
COL3A1-202ENST00000317840 SLC39A14Q15043 492 aa12.07□□□□□ -0.48
COL3A1-202ENST00000317840 NOL10Q9BSC4 688 aaKnown RBP12.07□□□□□ -0.48
COL3A1-202ENST00000317840 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.07□□□□□ -0.48
COL3A1-202ENST00000317840 KCNQ2O43526 872 aa12.07□□□□□ -0.48
COL3A1-202ENST00000317840 GABPB1Q06547 395 aaPredicted RBP12.07□□□□□ -0.48
COL3A1-202ENST00000317840 ZNF827Q17R98 1081 aa12.07□□□□□ -0.48
COL3A1-202ENST00000317840 TRMT44Q8IYL2 757 aaKnown RBP12.07□□□□□ -0.48
COL3A1-202ENST00000317840 TRERF1Q96PN7 1200 aa12.07□□□□□ -0.48
COL3A1-202ENST00000317840 DENND2AQ9ULE3 1009 aa12.07□□□□□ -0.48
COL3A1-202ENST00000317840 WDHD1O75717 1129 aaPredicted RBP12.07□□□□□ -0.48
COL3A1-202ENST00000317840 CASQ1P31415 396 aa12.07□□□□□ -0.48
COL3A1-202ENST00000317840 OSBPL5Q9H0X9 879 aaPredicted RBP12.07□□□□□ -0.48
COL3A1-202ENST00000317840 PCDHA5Q9Y5H7 936 aa12.07□□□□□ -0.48
COL3A1-202ENST00000317840 PALLDQ8WX93 1383 aa12.06□□□□□ -0.48
COL3A1-202ENST00000317840 MINDY4BA8MYZ0 360 aa12.06□□□□□ -0.48
COL3A1-202ENST00000317840 CMTR1Q8N1G2 835 aaKnown RBP12.06□□□□□ -0.48
COL3A1-202ENST00000317840 ATG3Q9NT62 314 aa12.06□□□□□ -0.48
COL3A1-202ENST00000317840 KCNJ14Q9UNX9 436 aa12.06□□□□□ -0.48
COL3A1-202ENST00000317840 RAD21O60216 631 aa12.06□□□□□ -0.48
COL3A1-202ENST00000317840 KARSQ15046 597 aaKnown RBP12.06□□□□□ -0.48
COL3A1-202ENST00000317840 RASSF8Q8NHQ8 419 aa12.06□□□□□ -0.48
COL3A1-202ENST00000317840 SMARCE1Q969G3 411 aa12.06□□□□□ -0.48
COL3A1-202ENST00000317840 INCENPQ9NQS7 918 aa12.06□□□□□ -0.48
COL3A1-202ENST00000317840 ZNF219Q9P2Y4 722 aaPredicted RBP12.06□□□□□ -0.48
COL3A1-202ENST00000317840 MST1RQ04912 1400 aa12.06□□□□□ -0.48
COL3A1-202ENST00000317840 LRRC37A3O60309 1634 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 ZNF532Q9HCE3 1301 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 KDM6AO15550 1401 aaPredicted RBP12.05□□□□□ -0.48
COL3A1-202ENST00000317840 PSDA5PKW4 1024 aaPredicted RBP12.05□□□□□ -0.48
COL3A1-202ENST00000317840 POLR2DO15514 142 aaKnown RBP12.05□□□□□ -0.48
COL3A1-202ENST00000317840 AFMP43652 599 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 TTF1Q15361 905 aaPredicted RBP12.05□□□□□ -0.48
COL3A1-202ENST00000317840 APOA5Q6Q788 366 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 NBPF11Q86T75 865 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 PPFIBP1Q86W92 1011 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 MB21D2Q8IYB1 491 aaPredicted RBP12.05□□□□□ -0.48
COL3A1-202ENST00000317840 KRI1Q8N9T8 703 aaKnown RBP12.05□□□□□ -0.48
COL3A1-202ENST00000317840 UBAC1Q9BSL1 405 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 NACAP1Q9BZK3 213 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 ST7Q9NRC1 585 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 DACH1Q9UI36 760 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 NFE2L3Q9Y4A8 694 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 BTBD18B2RXH4 712 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 ADKP55263 362 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms