RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 CLCN6P51797 869 aa22.03■■□□□ 1.12
RTN4-201ENST00000317610 KRT40Q6A162 431 aa22.03■■□□□ 1.12
RTN4-201ENST00000317610 SYTL4Q96C24 671 aaPredicted RBP22.03■■□□□ 1.12
RTN4-201ENST00000317610 SRRTQ9BXP5 876 aaKnown RBP22.03■■□□□ 1.12
RTN4-201ENST00000317610 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.03■■□□□ 1.12
RTN4-201ENST00000317610 SH2B2O14492 632 aaPredicted RBP22.03■■□□□ 1.12
RTN4-201ENST00000317610 HOMER1Q86YM7 354 aa22.03■■□□□ 1.12
RTN4-201ENST00000317610 REXO1L1PQ8IX06 675 aa22.03■■□□□ 1.12
RTN4-201ENST00000317610 ELOA2Q8IYF1 753 aaPredicted RBP22.03■■□□□ 1.12
RTN4-201ENST00000317610 FHOD1Q9Y613 1164 aa22.03■■□□□ 1.12
RTN4-201ENST00000317610 ISM2Q6H9L7 571 aa22.02■■□□□ 1.12
RTN4-201ENST00000317610 PROSER2Q86WR7 435 aaPredicted RBP22.02■■□□□ 1.12
RTN4-201ENST00000317610 AIFM3Q96NN9 605 aa22.02■■□□□ 1.12
RTN4-201ENST00000317610 METAP2P50579 478 aaKnown RBP eCLIP22.02■■□□□ 1.12
RTN4-201ENST00000317610 PLA2G12BQ9BX93 195 aa22.02■■□□□ 1.12
RTN4-201ENST00000317610 DNAI1Q9UI46 699 aa22.02■■□□□ 1.12
RTN4-201ENST00000317610 NPHP1O15259 732 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 CUTAO60888 179 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 SERPINC1P01008 464 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 TRDNQ13061 729 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 PNOCQ13519 176 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 ARHGAP29Q52LW3 1261 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 HSP90AB3PQ58FF7 597 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 RIC1Q4ADV7 1423 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 ERVV-2B6SEH9 535 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 CHRNA2Q15822 529 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 CYB5R4Q7L1T6 521 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 METTL16Q86W50 562 aaKnown RBP22.01■■□□□ 1.11
RTN4-201ENST00000317610 TMEM139Q8IV31 216 aa22.01■■□□□ 1.11
RTN4-201ENST00000317610 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.01■■□□□ 1.11
RTN4-201ENST00000317610 MAP3K15Q6ZN16 1313 aa22■■□□□ 1.11
RTN4-201ENST00000317610 FANCGO15287 622 aa22■■□□□ 1.11
RTN4-201ENST00000317610 ZRANB2O95218 330 aaKnown RBP eCLIP22■■□□□ 1.11
RTN4-201ENST00000317610 ADD2P35612 726 aa22■■□□□ 1.11
RTN4-201ENST00000317610 TRIM28Q13263 835 aaKnown RBP22■■□□□ 1.11
RTN4-201ENST00000317610 CFAP100Q494V2 611 aa22■■□□□ 1.11
RTN4-201ENST00000317610 TNS2Q63HR2 1409 aa22■■□□□ 1.11
RTN4-201ENST00000317610 TBC1D10CQ8IV04 446 aa22■■□□□ 1.11
RTN4-201ENST00000317610 CSF1RP07333 972 aa22■■□□□ 1.11
RTN4-201ENST00000317610 TCIRG1Q13488 830 aa22■■□□□ 1.11
RTN4-201ENST00000317610 APOA5Q6Q788 366 aa22■■□□□ 1.11
RTN4-201ENST00000317610 OLFM4Q6UX06 510 aa22■■□□□ 1.11
RTN4-201ENST00000317610 TADA3O75528 432 aa21.99■■□□□ 1.11
RTN4-201ENST00000317610 TOP1P11387 765 aaKnown RBP21.99■■□□□ 1.11
RTN4-201ENST00000317610 CPLX2Q6PUV4 134 aaKnown RBP21.99■■□□□ 1.11
RTN4-201ENST00000317610 KRBA2Q6ZNG9 492 aa21.99■■□□□ 1.11
RTN4-201ENST00000317610 NKX2-3Q8TAU0 364 aa21.99■■□□□ 1.11
RTN4-201ENST00000317610 ZNF512BQ96KM6 892 aaPredicted RBP21.99■■□□□ 1.11
RTN4-201ENST00000317610 DENND2AQ9ULE3 1009 aa21.99■■□□□ 1.11
RTN4-201ENST00000317610 PCDH11XQ9BZA7 1347 aa21.99■■□□□ 1.11
RTN4-201ENST00000317610 PCDH11YQ9BZA8 1340 aa21.99■■□□□ 1.11
RTN4-201ENST00000317610 ZSCAN12O43309 604 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 PNMA6AP0CW24 399 aaPredicted RBP21.98■■□□□ 1.11
RTN4-201ENST00000317610 CDC27P30260 824 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 TBX2Q13207 712 aaPredicted RBP21.98■■□□□ 1.11
RTN4-201ENST00000317610 NTRK3Q16288 839 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 PI16Q6UXB8 463 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 FOXP4Q8IVH2 680 aaPredicted RBP21.98■■□□□ 1.11
RTN4-201ENST00000317610 INTS13Q9NVM9 706 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 PARP3Q9Y6F1 533 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 ARHGAP6O43182 974 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 CCDC102BQ68D86 513 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 UBXN4Q92575 508 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 TMEM87BQ96K49 555 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 UTP14AQ9BVJ6 771 aaKnown RBP21.98■■□□□ 1.11
RTN4-201ENST00000317610 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.98■■□□□ 1.11
RTN4-201ENST00000317610 ST7Q9NRC1 585 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 FANCLQ9NW38 375 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 TNS3Q68CZ2 1445 aa21.98■■□□□ 1.11
RTN4-201ENST00000317610 TMEM232C9JQI7 657 aa21.97■■□□□ 1.11
RTN4-201ENST00000317610 PCCAP05165 728 aaPredicted RBP21.97■■□□□ 1.11
RTN4-201ENST00000317610 MCAMP43121 646 aa21.97■■□□□ 1.11
RTN4-201ENST00000317610 LONRF3Q496Y0 759 aa21.97■■□□□ 1.11
RTN4-201ENST00000317610 CABLES1Q8TDN4 633 aa21.97■■□□□ 1.11
RTN4-201ENST00000317610 CLIC6Q96NY7 704 aa21.97■■□□□ 1.11
RTN4-201ENST00000317610 ARGLU1Q9NWB6 273 aaPredicted RBP21.97■■□□□ 1.11
RTN4-201ENST00000317610 KCNH3Q9ULD8 1083 aa21.97■■□□□ 1.11
RTN4-201ENST00000317610 STK36Q9NRP7 1315 aa21.97■■□□□ 1.11
RTN4-201ENST00000317610 EFCAB8A8MWE9 144 aa21.97■■□□□ 1.11
RTN4-201ENST00000317610 MDM2Q00987 491 aaPredicted RBP21.97■■□□□ 1.11
RTN4-201ENST00000317610 PCDHA5Q9Y5H7 936 aa21.97■■□□□ 1.11
RTN4-201ENST00000317610 VWA3AA6NCI4 1184 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 TPM1P09493 284 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 NKX1-1Q15270 411 aaPredicted RBP21.96■■□□□ 1.11
RTN4-201ENST00000317610 SGMS1Q86VZ5 419 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 MPHOSPH8Q99549 860 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 CCDC66A2RUB6 948 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 RANBP6O60518 1105 aaKnown RBP21.96■■□□□ 1.11
RTN4-201ENST00000317610 BMP6P22004 513 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 PLA2G4AP47712 749 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 GNL2Q13823 731 aaKnown RBP21.96■■□□□ 1.11
RTN4-201ENST00000317610 UBE3CQ15386 1083 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 CNNM3Q8NE01 707 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 IGDCC4Q8TDY8 1250 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 PHKBQ93100 1093 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 FAM217BQ9NTX9 383 aaPredicted RBP21.96■■□□□ 1.11
RTN4-201ENST00000317610 PPP2R2CQ9Y2T4 447 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 LRP6O75581 1613 aa21.96■■□□□ 1.11
RTN4-201ENST00000317610 GOLGA6L9A6NEM1 432 aa21.95■■□□□ 1.1
RTN4-201ENST00000317610 ZBTB43O43298 467 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms