RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 DZIP1Q86YF9 867 aaKnown RBP20.09■□□□□ 0.81
LSM1-201ENST00000311351 DBNDD2Q9BQY9 259 aa20.09■□□□□ 0.81
LSM1-201ENST00000311351 GPR108Q9NPR9 543 aa20.09■□□□□ 0.81
LSM1-201ENST00000311351 RPAP1Q9BWH6 1393 aaPredicted RBP20.08■□□□□ 0.81
LSM1-201ENST00000311351 MYO5AQ9Y4I1 1855 aaKnown RBP20.08■□□□□ 0.81
LSM1-201ENST00000311351 MCAMP43121 646 aa20.08■□□□□ 0.81
LSM1-201ENST00000311351 SPRYD7Q5W111 196 aa20.08■□□□□ 0.81
LSM1-201ENST00000311351 SPATA5Q8NB90 893 aa20.08■□□□□ 0.81
LSM1-201ENST00000311351 SAGE1Q9NXZ1 904 aa20.08■□□□□ 0.81
LSM1-201ENST00000311351 DDX19BQ9UMR2 479 aa20.08■□□□□ 0.81
LSM1-201ENST00000311351 EXOC6BQ9Y2D4 811 aa20.08■□□□□ 0.81
LSM1-201ENST00000311351 DOCK2Q92608 1830 aa20.08■□□□□ 0.8
LSM1-201ENST00000311351 GAKO14976 1311 aa20.07■□□□□ 0.8
LSM1-201ENST00000311351 CAPN15O75808 1086 aa20.07■□□□□ 0.8
LSM1-201ENST00000311351 NFIAQ12857 509 aa20.07■□□□□ 0.8
LSM1-201ENST00000311351 FKBP1CQ5VVH2 108 aa20.07■□□□□ 0.8
LSM1-201ENST00000311351 FAM83AQ86UY5 434 aa20.07■□□□□ 0.8
LSM1-201ENST00000311351 SLC10A4Q96EP9 437 aa20.07■□□□□ 0.8
LSM1-201ENST00000311351 WNK4Q96J92 1243 aa20.07■□□□□ 0.8
LSM1-201ENST00000311351 TLR7Q9NYK1 1049 aaKnown RBP20.07■□□□□ 0.8
LSM1-201ENST00000311351 TBC1D9Q6ZT07 1266 aa20.06■□□□□ 0.8
LSM1-201ENST00000311351 REM2Q8IYK8 340 aaPredicted RBP20.06■□□□□ 0.8
LSM1-201ENST00000311351 ANKRD13AQ8IZ07 590 aa20.06■□□□□ 0.8
LSM1-201ENST00000311351 ZNF384Q8TF68 577 aa20.06■□□□□ 0.8
LSM1-201ENST00000311351 RFX7Q2KHR2 1363 aa20.06■□□□□ 0.8
LSM1-201ENST00000311351 UQCRFS1P1P0C7P4 283 aa20.05■□□□□ 0.8
LSM1-201ENST00000311351 GJA5P36382 358 aa20.05■□□□□ 0.8
LSM1-201ENST00000311351 MECOMQ03112 1051 aa20.05■□□□□ 0.8
LSM1-201ENST00000311351 TCP10Q12799 353 aa20.05■□□□□ 0.8
LSM1-201ENST00000311351 TTC39AQ5SRH9 613 aa20.05■□□□□ 0.8
LSM1-201ENST00000311351 SPTY2D1Q68D10 685 aaPredicted RBP20.05■□□□□ 0.8
LSM1-201ENST00000311351 ERICH6Q7L0X2 663 aa20.05■□□□□ 0.8
LSM1-201ENST00000311351 ELP3Q9H9T3 547 aa20.05■□□□□ 0.8
LSM1-201ENST00000311351 SNRKQ9NRH2 765 aa20.05■□□□□ 0.8
LSM1-201ENST00000311351 ZBTB40Q9NUA8 1239 aa20.05■□□□□ 0.8
LSM1-201ENST00000311351 USP40Q9NVE5 1235 aa20.05■□□□□ 0.8
LSM1-201ENST00000311351 FAM198AQ9UFP1 575 aa20.05■□□□□ 0.8
LSM1-201ENST00000311351 DBNLQ9UJU6 430 aaKnown RBP20.05■□□□□ 0.8
LSM1-201ENST00000311351 MROH7-TTC4A0A0A0MT08 1334 aa20.04■□□□□ 0.8
LSM1-201ENST00000311351 BTDP43251 543 aa20.04■□□□□ 0.8
LSM1-201ENST00000311351 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.04■□□□□ 0.8
LSM1-201ENST00000311351 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.04■□□□□ 0.8
LSM1-201ENST00000311351 FAM151AQ8WW52 585 aa20.04■□□□□ 0.8
LSM1-201ENST00000311351 EAF2Q96CJ1 260 aaPredicted RBP20.04■□□□□ 0.8
LSM1-201ENST00000311351 CCDC8Q9H0W5 538 aaPredicted RBP20.04■□□□□ 0.8
LSM1-201ENST00000311351 UNCXA6NJT0 531 aa20.03■□□□□ 0.8
LSM1-201ENST00000311351 ZBTB48P10074 688 aaPredicted RBP20.03■□□□□ 0.8
LSM1-201ENST00000311351 TM4SF4P48230 202 aa20.03■□□□□ 0.8
LSM1-201ENST00000311351 SREBF2Q12772 1141 aa20.03■□□□□ 0.8
LSM1-201ENST00000311351 VGLL4Q14135 290 aa20.03■□□□□ 0.8
LSM1-201ENST00000311351 SIRT2Q8IXJ6 389 aa20.03■□□□□ 0.8
LSM1-201ENST00000311351 CNKSR2Q8WXI2 1034 aa20.03■□□□□ 0.8
LSM1-201ENST00000311351 CCDC158Q5M9N0 1113 aa20.02■□□□□ 0.8
LSM1-201ENST00000311351 ZFPM1Q8IX07 1006 aa20.02■□□□□ 0.8
LSM1-201ENST00000311351 YTHDC1Q96MU7 727 aaKnown RBP20.02■□□□□ 0.8
LSM1-201ENST00000311351 RAI14Q9P0K7 980 aa20.02■□□□□ 0.8
LSM1-201ENST00000311351 APBB1O00213 710 aa20.01■□□□□ 0.79
LSM1-201ENST00000311351 TBC1D8O95759 1140 aa20.01■□□□□ 0.79
LSM1-201ENST00000311351 MAP3K9P80192 1104 aa20.01■□□□□ 0.79
LSM1-201ENST00000311351 PDE3AQ14432 1141 aa20.01■□□□□ 0.79
LSM1-201ENST00000311351 ERC1Q8IUD2 1116 aa20.01■□□□□ 0.79
LSM1-201ENST00000311351 SLF2Q8IX21 1173 aa20.01■□□□□ 0.79
LSM1-201ENST00000311351 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.01■□□□□ 0.79
LSM1-201ENST00000311351 NSUN4Q96CB9 384 aaKnown RBP20.01■□□□□ 0.79
LSM1-201ENST00000311351 OPTNQ96CV9 577 aa20.01■□□□□ 0.79
LSM1-201ENST00000311351 WRNIP1Q96S55 665 aa20.01■□□□□ 0.79
LSM1-201ENST00000311351 IL1RAPL2Q9NP60 686 aa20.01■□□□□ 0.79
LSM1-201ENST00000311351 MANSC4A6NHS7 340 aaPredicted RBP20■□□□□ 0.79
LSM1-201ENST00000311351 RGS3P49796 1198 aa20■□□□□ 0.79
LSM1-201ENST00000311351 MIGA2Q7L4E1 593 aa20■□□□□ 0.79
LSM1-201ENST00000311351 AACSQ86V21 672 aa20■□□□□ 0.79
LSM1-201ENST00000311351 RPAP2Q8IXW5 612 aaPredicted RBP20■□□□□ 0.79
LSM1-201ENST00000311351 FAM163AQ96GL9 167 aaPredicted RBP20■□□□□ 0.79
LSM1-201ENST00000311351 DDX4Q9NQI0 724 aaKnown RBP20■□□□□ 0.79
LSM1-201ENST00000311351 CSADQ9Y600 493 aa20■□□□□ 0.79
LSM1-201ENST00000311351 CDK5RAP2Q96SN8 1893 aa19.99■□□□□ 0.79
LSM1-201ENST00000311351 IGF2BP3O00425 579 aaKnown RBP eCLIP19.99■□□□□ 0.79
LSM1-201ENST00000311351 WDHD1O75717 1129 aaPredicted RBP19.99■□□□□ 0.79
LSM1-201ENST00000311351 ZAP70P43403 619 aa19.99■□□□□ 0.79
LSM1-201ENST00000311351 PICALMQ13492 652 aa19.99■□□□□ 0.79
LSM1-201ENST00000311351 DCAF15Q66K64 600 aa19.99■□□□□ 0.79
LSM1-201ENST00000311351 ZKSCAN4Q969J2 545 aaPredicted RBP19.99■□□□□ 0.79
LSM1-201ENST00000311351 HOOK2Q96ED9 719 aa19.99■□□□□ 0.79
LSM1-201ENST00000311351 OTUD5Q96G74 571 aa19.99■□□□□ 0.79
LSM1-201ENST00000311351 IDI2Q9BXS1 227 aa19.99■□□□□ 0.79
LSM1-201ENST00000311351 LRP2BPQ9P2M1 347 aa19.99■□□□□ 0.79
LSM1-201ENST00000311351 SNCAIPQ9Y6H5 919 aa19.99■□□□□ 0.79
LSM1-201ENST00000311351 ATRNL1Q5VV63 1379 aa19.98■□□□□ 0.79
LSM1-201ENST00000311351 GPR75-ASB3A0A0A6YYF3 556 aa19.98■□□□□ 0.79
LSM1-201ENST00000311351 HMMRO75330 724 aa19.98■□□□□ 0.79
LSM1-201ENST00000311351 CYP2E1P05181 493 aaPredicted RBP19.98■□□□□ 0.79
LSM1-201ENST00000311351 RHBDL3P58872 404 aa19.98■□□□□ 0.79
LSM1-201ENST00000311351 GSTO1P78417 241 aa19.98■□□□□ 0.79
LSM1-201ENST00000311351 HSP90AB4PQ58FF6 505 aa19.98■□□□□ 0.79
LSM1-201ENST00000311351 RHPN1Q8TCX5 695 aa19.98■□□□□ 0.79
LSM1-201ENST00000311351 ZNF512BQ96KM6 892 aaPredicted RBP19.98■□□□□ 0.79
LSM1-201ENST00000311351 ZNF341Q9BYN7 854 aa19.98■□□□□ 0.79
LSM1-201ENST00000311351 R3HDMLQ9H3Y0 253 aa19.98■□□□□ 0.79
LSM1-201ENST00000311351 ENTPD3O75355 529 aa19.97■□□□□ 0.79
LSM1-201ENST00000311351 INPP5BP32019 993 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms