RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 KRBA2Q6ZNG9 492 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 THUMPD2Q9BTF0 503 aaKnown RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 ZNF215Q9UL58 517 aaPredicted RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 TPX2Q9ULW0 747 aaKnown RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 PFDN1O60925 122 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 ZRANB2O95218 330 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS35-201ENST00000299138 HOOK3Q86VS8 718 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 C8orf76Q96K31 380 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 SMC6Q96SB8 1091 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 DDX21Q9NR30 783 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS35-201ENST00000299138 KIAA1468Q9P260 1216 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 MRFAP1Q9Y605 127 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 MACROD2A1Z1Q3 448 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 SPTLC2O15270 562 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 CUTAO60888 179 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 CSB-PGBD3P0DP91 1061 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 MATR3P43243 847 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS35-201ENST00000299138 ZBTB17Q13105 803 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 PKP1Q13835 747 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 CFAP100Q494V2 611 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 MIER3Q7Z3K6 550 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 FAM71BQ8TC56 605 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 XAB2Q9HCS7 855 aaKnown RBP7.23□□□□□ -1.25
VPS35-201ENST00000299138 SRRM3A6NNA2 597 aaPredicted RBP7.23□□□□□ -1.25
VPS35-201ENST00000299138 SLC27A2O14975 620 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 DNAJC25Q9H1X3 360 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 PALD1Q9ULE6 856 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 PYCARDQ9ULZ3 195 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 DIP2CQ9Y2E4 1556 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 PPP6R2O75170 966 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 SLMAPQ14BN4 828 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 PROSER2Q86WR7 435 aaPredicted RBP7.23□□□□□ -1.25
VPS35-201ENST00000299138 TMTC1Q8IUR5 882 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 CXorf38Q8TB03 319 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 VIMP08670 466 aaKnown RBP7.23□□□□□ -1.25
VPS35-201ENST00000299138 IL15P40933 162 aaPredicted RBP7.23□□□□□ -1.25
VPS35-201ENST00000299138 STIM1Q13586 685 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 CROCCP2Q86T23 111 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 C16orf71Q8IYS4 520 aaPredicted RBP7.23□□□□□ -1.25
VPS35-201ENST00000299138 ZNF710Q8N1W2 664 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 CCDC155Q8N6L0 562 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 RMND1Q9NWS8 449 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 TMEM2Q9UHN6 1383 aa7.23□□□□□ -1.25
VPS35-201ENST00000299138 CTAGE15A4D2H0 777 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 NBPF7P0C2Y1 421 aaPredicted RBP7.22□□□□□ -1.25
VPS35-201ENST00000299138 CTAGE8P0CG41 777 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 MCM6Q14566 821 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 TTF1Q15361 905 aaPredicted RBP7.22□□□□□ -1.25
VPS35-201ENST00000299138 CAMK4Q16566 473 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 BEND3Q5T5X7 828 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 CTAGE4Q8IX94 777 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 LMNTD2Q8IXW0 634 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 OTUD7AQ8TE49 926 aaPredicted RBP7.22□□□□□ -1.25
VPS35-201ENST00000299138 USH1CQ9Y6N9 552 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 MROH2AA6NES4 1674 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 UTYO14607 1347 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 ACEP12821 1306 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 RESTQ13127 1097 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 RILPL1Q5EBL4 403 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 ANKS4BQ8N8V4 417 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 GRM8O00222 908 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 USO1O60763 962 aaKnown RBP7.22□□□□□ -1.25
VPS35-201ENST00000299138 ABCB7O75027 752 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 EVCP57679 992 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 IQCB1Q15051 598 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 SPA17Q15506 151 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 GSDMBQ8TAX9 411 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 MED23Q9ULK4 1368 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 OPA1O60313 960 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 STMN1P16949 149 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 SATB1Q01826 763 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 MTHFSDQ2M296 383 aaKnown RBP7.22□□□□□ -1.25
VPS35-201ENST00000299138 MCM10Q7L590 875 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 CCDC50Q8IVM0 306 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 ZBTB16Q05516 673 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 STK3Q13188 491 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 ESCO1Q5FWF5 840 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 TMEM87BQ96K49 555 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 NSRP1Q9H0G5 558 aaKnown RBP7.22□□□□□ -1.25
VPS35-201ENST00000299138 IL1RAPL2Q9NP60 686 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 RNF216Q9NWF9 866 aaPredicted RBP7.22□□□□□ -1.25
VPS35-201ENST00000299138 FRMD3A2A2Y4 597 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 PPFIA3O75145 1194 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 RNF8O76064 485 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 U2AF2P26368 475 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS35-201ENST00000299138 MYCBPQ99417 103 aaPredicted RBP7.22□□□□□ -1.25
VPS35-201ENST00000299138 CNNM2Q9H8M5 875 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 STIM2Q9P246 746 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 VPS18Q9P253 973 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 CLEC11AQ9Y240 323 aa7.22□□□□□ -1.25
VPS35-201ENST00000299138 JCADQ9P266 1359 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 EBAG9O00559 213 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 RPS6KA5O75582 802 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 SLFN14P0C7P3 912 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 ATF3P18847 181 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 DNAJC21Q5F1R6 531 aaKnown RBP7.21□□□□□ -1.25
VPS35-201ENST00000299138 ARMC9Q7Z3E5 817 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 CACTINQ8WUQ7 758 aaKnown RBP7.21□□□□□ -1.25
VPS35-201ENST00000299138 NUCKS1Q9H1E3 243 aaKnown RBP7.21□□□□□ -1.25
VPS35-201ENST00000299138 RNF14Q9UBS8 474 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms