RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 ACTN4O43707 911 aaKnown RBP13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 MAGEA9P43362 315 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 INPP1P49441 399 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 GRAMD4Q6IC98 578 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 TMEM132EQ6IEE7 984 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 ELP1O95163 1332 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 MAP3K7CLP57077 242 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 CCDC197Q8NCU1 140 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 Q6ZUG5 572 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 HMG20BQ9P0W2 317 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 SCINQ9Y6U3 715 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 LRMPQ12912 555 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 ZBBXA8MT70 800 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 CTNNA1P35221 906 aaKnown RBP13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 RBM5P52756 815 aaKnown RBP eCLIP13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 NUTM2AQ8IVF1 878 aaPredicted RBP13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 GAS8O95995 478 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 MYL5Q02045 173 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 ALG1Q9BT22 464 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 AMOTQ4VCS5 1084 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 MAP3K21Q5TCX8 1036 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 ANKRD20A3Q5VUR7 823 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 SLF1Q9BQI6 1058 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 RUSC2Q8N2Y8 1516 aa13.11□□□□□ -0.31
SHROOM3-201ENST00000296043 FAM170AA1A519 330 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 IRX4P78413 519 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 RMDN2Q96LZ7 410 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 KLF18A0A0U1RQI7 1052 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 A0A1B0GVL5 298 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 MAP3K7O43318 606 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 MYCNP04198 464 aaPredicted RBP13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 GUCY2CP25092 1073 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 EEF1DP29692 281 aaKnown RBP13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 F6X3S4 739 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 MAN1A2O60476 641 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 NEK1Q96PY6 1258 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 ZRANB1Q9UGI0 708 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 HNRNPCP07910 306 aaKnown RBP eCLIP13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 CARMIL2Q6F5E8 1435 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 ITIH3Q06033 890 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 TADA2BQ86TJ2 420 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 FBXO41Q8TF61 875 aa13.1□□□□□ -0.31
SHROOM3-201ENST00000296043 KCNV2Q8TDN2 545 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 TTC21AQ8NDW8 1320 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 ZNF213O14771 459 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 RAPGEF1Q13905 1077 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 EVI5LQ96CN4 794 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 ASIC3Q9UHC3 531 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 PLIN2Q99541 437 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 SPOPO43791 374 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 ANKRD65E5RJM6 399 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 SLC4A8Q2Y0W8 1093 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 METTL24Q5JXM2 366 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 FAM169AQ9Y6X4 670 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 NPHP3Q7Z494 1330 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 KRT15P19012 456 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 ACTN3Q08043 901 aaPredicted RBP13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 CLSTN2Q9H4D0 955 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 PYCARDQ9ULZ3 195 aa13.09□□□□□ -0.31
SHROOM3-201ENST00000296043 CCDC14Q49A88 953 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 HVCN1Q96D96 273 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 GFAPP14136 432 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 KIF22Q14807 665 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 CCDC13Q8IYE1 715 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 CAPRIN2Q6IMN6 1127 aaKnown RBP13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 ZNF354CQ86Y25 554 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 EFCAB8A8MWE9 144 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 ARMCX6Q7L4S7 300 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 MYOM3Q5VTT5 1437 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 GYS2P54840 703 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 NSD3Q9BZ95 1437 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 ENO4A6NNW6 628 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 KRT14P02533 472 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 RASA3Q14644 834 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 STXBP4Q6ZWJ1 553 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 ESYT1Q9BSJ8 1104 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 PCDHB15Q9Y5E8 787 aa13.08□□□□□ -0.32
SHROOM3-201ENST00000296043 TBC1D8O95759 1140 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 PDCD2Q16342 344 aaPredicted RBP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 MCM10Q7L590 875 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 UBL4BQ8N7F7 174 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 MAK16Q9BXY0 300 aaKnown RBP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 NBPF10Q6P3W6 841 aaKnown RBP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 TROVE2P10155 538 aaKnown RBP eCLIP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 RCN2Q14257 317 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 ALDH1L2Q3SY69 923 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 DCAF17Q5H9S7 520 aaPredicted RBP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 CFAP221Q4G0U5 840 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 FGD4Q96M96 766 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 ARHGAP6O43182 974 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 ZNF530Q6P9A1 599 aaPredicted RBP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 ARMC2Q8NEN0 867 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 LEO1Q8WVC0 666 aaPredicted RBP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 EIF3CLB5ME19 914 aaKnown RBP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 PSMC1P62191 440 aaKnown RBP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 ST13P4Q8IZP2 240 aaPredicted RBP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 EIF3CQ99613 913 aaKnown RBP13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 FAM167BQ9BTA0 163 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 VAT1LQ9HCJ6 419 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms