RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 RTL9Q8NET4 1388 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 USP19O94966 1318 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 CCDC25Q86WR0 208 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 TCEANC2Q96MN5 208 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 KCNK9Q9NPC2 374 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 TMOD2Q9NZR1 351 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 ABCA9Q8IUA7 1624 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 INO80Q9ULG1 1556 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-201ENST00000295550 STAT6P42226 847 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 NLRP5P59047 1200 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 SLC26A6Q9BXS9 759 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 GSPT1P15170 499 aaKnown RBP11.11□□□□□ -0.63
COL6A3-201ENST00000295550 DHX32Q7L7V1 743 aaKnown RBP11.11□□□□□ -0.63
COL6A3-201ENST00000295550 PA2G4Q9UQ80 394 aaKnown RBP11.11□□□□□ -0.63
COL6A3-201ENST00000295550 RABGAP1Q9Y3P9 1069 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 UBA7P41226 1012 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 RNF168Q8IYW5 571 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-201ENST00000295550 UBLCP1Q8WVY7 318 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-201ENST00000295550 BICD1Q96G01 975 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 CLSTN2Q9H4D0 955 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 CRACR2BQ8N4Y2 399 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-201ENST00000295550 SNX14Q9Y5W7 946 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 KDRP35968 1356 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 ATP2A2P16615 1042 aaKnown RBP11.1□□□□□ -0.63
COL6A3-201ENST00000295550 HSP90AA4PQ58FG1 418 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 G2E3Q7L622 706 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 NUF2Q9BZD4 464 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 HELLSQ9NRZ9 838 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 TMEM110-MUSTN1A8MSY1 372 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 KRT86O43790 486 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 LRRC7Q96NW7 1537 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 ZBTB43O43298 467 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 KRT28Q7Z3Y7 464 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 LRRC2Q9BYS8 371 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 FRMPD1Q5SYB0 1578 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 RRAGBQ5VZM2 374 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 ANTXR1Q9H6X2 564 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 PTPDC1A2A3K4 754 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 MMRN2Q9H8L6 949 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 NKIRAS1Q9NYS0 192 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 VIRMAQ69YN4 1812 aaKnown RBP11.1□□□□□ -0.63
COL6A3-201ENST00000295550 EEF2P13639 858 aaKnown RBP11.1□□□□□ -0.63
COL6A3-201ENST00000295550 CCDC174Q6PII3 467 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 ERMNQ8TAM6 284 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 SPAG5Q96R06 1193 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 BRD1O95696 1058 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 COPS6Q7L5N1 327 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 LMBR1Q8WVP7 490 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 ARID5AQ03989 594 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 IP6K1Q92551 441 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 ALG1Q9BT22 464 aa11.1□□□□□ -0.63
COL6A3-201ENST00000295550 SLC27A2O14975 620 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 PPP1R12CQ9BZL4 782 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 CPSF1Q10570 1443 aaKnown RBP11.09□□□□□ -0.63
COL6A3-201ENST00000295550 RNMTO43148 476 aaKnown RBP11.09□□□□□ -0.63
COL6A3-201ENST00000295550 IGSF3O75054 1194 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 TFCP2Q12800 502 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 TMTC2Q8N394 836 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 INPP5BP32019 993 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 CEBPAP49715 358 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-201ENST00000295550 SF3B2Q13435 895 aaKnown RBP11.09□□□□□ -0.63
COL6A3-201ENST00000295550 CWF19L2Q2TBE0 894 aaKnown RBP11.09□□□□□ -0.63
COL6A3-201ENST00000295550 MED14O60244 1454 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 ATP5DP30049 168 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 FYB2Q5VWT5 728 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 MTRF1LQ9UGC7 380 aaKnown RBP11.09□□□□□ -0.63
COL6A3-201ENST00000295550 GUCA1BQ9UMX6 200 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 WTAPQ15007 396 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 CCDC14Q49A88 953 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 ERCC3P19447 782 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 LRRC27Q9C0I9 530 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 PPP1R1BQ9UD71 204 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-201ENST00000295550 RGS22Q8NE09 1264 aa11.09□□□□□ -0.63
COL6A3-201ENST00000295550 VGLL3A8MV65 326 aa11.08□□□□□ -0.63
COL6A3-201ENST00000295550 PPP2R3AQ06190 1150 aa11.08□□□□□ -0.63
COL6A3-201ENST00000295550 PPP1R7Q15435 360 aa11.08□□□□□ -0.63
COL6A3-201ENST00000295550 SNRKQ9NRH2 765 aa11.08□□□□□ -0.63
COL6A3-201ENST00000295550 ELP1O95163 1332 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 GJC1P36383 396 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 CEP128Q6ZU80 1094 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 MRVI1Q9Y6F6 885 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 PDE4BQ07343 736 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 CCDC62Q6P9F0 684 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 MYRIPQ8NFW9 859 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 ANKIB1Q9P2G1 1089 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 VIMP08670 466 aaKnown RBP11.08□□□□□ -0.64
COL6A3-201ENST00000295550 KRT83P78385 493 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 SPAG1Q07617 926 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 RTN1Q16799 776 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 PPLO60437 1756 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 NDC80O14777 642 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 NEDD9Q14511 834 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 ATP2B3Q16720 1220 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 LZTFL1Q9NQ48 299 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 GNAT2P19087 354 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 AFMP43652 599 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 PPP1R9BQ96SB3 815 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 WHAMMP3Q1A5X7 153 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 SH2D4BQ5SQS7 431 aa11.08□□□□□ -0.64
COL6A3-201ENST00000295550 ARFGAP2Q8N6H7 521 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms