RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 BCORQ6W2J9 1755 aa23.4■■□□□ 1.34
VPS53-201ENST00000291074 CASZ1Q86V15 1759 aa23.39■■□□□ 1.34
VPS53-201ENST00000291074 KINO60870 393 aaKnown RBP23.39■■□□□ 1.34
VPS53-201ENST00000291074 STK38Q15208 465 aa23.39■■□□□ 1.34
VPS53-201ENST00000291074 ALX1Q15699 326 aa23.39■■□□□ 1.34
VPS53-201ENST00000291074 MYSM1Q5VVJ2 828 aa23.39■■□□□ 1.34
VPS53-201ENST00000291074 LY9Q9HBG7 655 aa23.39■■□□□ 1.34
VPS53-201ENST00000291074 A0A1B0GVL5 298 aa23.39■■□□□ 1.33
VPS53-201ENST00000291074 KIF23Q02241 960 aaPredicted RBP23.39■■□□□ 1.33
VPS53-201ENST00000291074 NFXL1Q6ZNB6 911 aa23.39■■□□□ 1.33
VPS53-201ENST00000291074 PIBF1Q8WXW3 757 aa23.39■■□□□ 1.33
VPS53-201ENST00000291074 RTL9Q8NET4 1388 aa23.38■■□□□ 1.33
VPS53-201ENST00000291074 ERFEQ4G0M1 354 aa23.38■■□□□ 1.33
VPS53-201ENST00000291074 TMEM67Q5HYA8 995 aa23.38■■□□□ 1.33
VPS53-201ENST00000291074 LINC00116Q8NCU8 138 aa23.38■■□□□ 1.33
VPS53-201ENST00000291074 TDRD7Q8NHU6 1098 aaKnown RBP23.38■■□□□ 1.33
VPS53-201ENST00000291074 ZSWIM5Q9P217 1185 aa23.38■■□□□ 1.33
VPS53-201ENST00000291074 BCL9LQ86UU0 1499 aa23.38■■□□□ 1.33
VPS53-201ENST00000291074 LTBP4Q8N2S1 1624 aa23.38■■□□□ 1.33
VPS53-201ENST00000291074 MRPS27Q92552 414 aaKnown RBP23.38■■□□□ 1.33
VPS53-201ENST00000291074 ALG1Q9BT22 464 aa23.38■■□□□ 1.33
VPS53-201ENST00000291074 UBE2Q2LH0YL09 131 aa23.37■■□□□ 1.33
VPS53-201ENST00000291074 TPM2P07951 284 aa23.37■■□□□ 1.33
VPS53-201ENST00000291074 SF3A1Q15459 793 aaKnown RBP23.37■■□□□ 1.33
VPS53-201ENST00000291074 TMEM87BQ96K49 555 aa23.37■■□□□ 1.33
VPS53-201ENST00000291074 SLC4A4Q9Y6R1 1079 aa23.37■■□□□ 1.33
VPS53-201ENST00000291074 ZBTB43O43298 467 aa23.37■■□□□ 1.33
VPS53-201ENST00000291074 RRP12Q5JTH9 1297 aaKnown RBP23.37■■□□□ 1.33
VPS53-201ENST00000291074 LRP2BPQ9P2M1 347 aa23.37■■□□□ 1.33
VPS53-201ENST00000291074 PIP4K2BP78356 416 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 FAM98CQ17RN3 349 aaKnown RBP23.36■■□□□ 1.33
VPS53-201ENST00000291074 BICDL1Q6ZP65 573 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 BARGINQ6ZT62 677 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 FMR1NBQ8N0W7 255 aaPredicted RBP23.36■■□□□ 1.33
VPS53-201ENST00000291074 A0A1B0GUL6 1792 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 TIAM2Q8IVF5 1701 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 CTAGE5O15320 804 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 GYG1P46976 350 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 TDO2P48775 406 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 NDUFA8P51970 172 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 ADALQ6DHV7 355 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 BRAPQ7Z569 592 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 PYCARDQ9ULZ3 195 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 ZNF652Q9Y2D9 606 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 GOLGA8AA7E2F4 631 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 RANBP6O60518 1105 aaKnown RBP23.36■■□□□ 1.33
VPS53-201ENST00000291074 NOLC1Q14978 699 aaKnown RBP eCLIP23.36■■□□□ 1.33
VPS53-201ENST00000291074 ADGRA1Q86SQ6 560 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 FBXW7Q969H0 707 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 ZKSCAN3Q9BRR0 538 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 TRIM5Q9C035 493 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 FAM217BQ9NTX9 383 aaPredicted RBP23.36■■□□□ 1.33
VPS53-201ENST00000291074 POLR3EQ9NVU0 708 aa23.36■■□□□ 1.33
VPS53-201ENST00000291074 IFIT3O14879 490 aaKnown RBP23.35■■□□□ 1.33
VPS53-201ENST00000291074 SPTLC2O15270 562 aa23.35■■□□□ 1.33
VPS53-201ENST00000291074 AKNAD1Q5T1N1 836 aa23.35■■□□□ 1.33
VPS53-201ENST00000291074 PTF1AQ7RTS3 328 aa23.35■■□□□ 1.33
VPS53-201ENST00000291074 SMARCC1Q92922 1105 aaPredicted RBP23.35■■□□□ 1.33
VPS53-201ENST00000291074 TOMM22Q9NS69 142 aa23.35■■□□□ 1.33
VPS53-201ENST00000291074 PTGS1P23219 599 aa23.35■■□□□ 1.33
VPS53-201ENST00000291074 IQCB1Q15051 598 aa23.35■■□□□ 1.33
VPS53-201ENST00000291074 NTRK3Q16288 839 aa23.35■■□□□ 1.33
VPS53-201ENST00000291074 STX1AQ16623 288 aa23.35■■□□□ 1.33
VPS53-201ENST00000291074 ZNF75DP51815 510 aa23.34■■□□□ 1.33
VPS53-201ENST00000291074 KRT40Q6A162 431 aa23.34■■□□□ 1.33
VPS53-201ENST00000291074 SYNE3Q6ZMZ3 975 aa23.34■■□□□ 1.33
VPS53-201ENST00000291074 SGMS1Q86VZ5 419 aa23.34■■□□□ 1.33
VPS53-201ENST00000291074 ABCF2Q9UG63 623 aa23.34■■□□□ 1.33
VPS53-201ENST00000291074 YEATS4O95619 227 aa23.34■■□□□ 1.33
VPS53-201ENST00000291074 PLA2G4DQ86XP0 818 aa23.34■■□□□ 1.33
VPS53-201ENST00000291074 KCNG4Q8TDN1 519 aa23.34■■□□□ 1.33
VPS53-201ENST00000291074 CDC5LQ99459 802 aaKnown RBP23.34■■□□□ 1.33
VPS53-201ENST00000291074 COL1A1P02452 1464 aaPredicted RBP23.33■■□□□ 1.33
VPS53-201ENST00000291074 ANO1Q5XXA6 986 aa23.33■■□□□ 1.33
VPS53-201ENST00000291074 MFSD6Q6ZSS7 791 aa23.33■■□□□ 1.33
VPS53-201ENST00000291074 VPS37DQ86XT2 251 aa23.33■■□□□ 1.33
VPS53-201ENST00000291074 NRBP1Q9UHY1 535 aa23.33■■□□□ 1.33
VPS53-201ENST00000291074 PNPLA7Q6ZV29 1317 aa23.33■■□□□ 1.32
VPS53-201ENST00000291074 A0A1W2PQ27 194 aa23.33■■□□□ 1.32
VPS53-201ENST00000291074 A0A1W2PQ64 194 aa23.33■■□□□ 1.32
VPS53-201ENST00000291074 A0A1W2PQD8 194 aa23.33■■□□□ 1.32
VPS53-201ENST00000291074 CDKL5O76039 1030 aa23.33■■□□□ 1.32
VPS53-201ENST00000291074 GOLGA6L6A8MZA4 724 aa23.32■■□□□ 1.32
VPS53-201ENST00000291074 CYP7A1P22680 504 aa23.32■■□□□ 1.32
VPS53-201ENST00000291074 DNTTIP2Q5QJE6 756 aaKnown RBP23.32■■□□□ 1.32
VPS53-201ENST00000291074 DRC7Q8IY82 874 aa23.32■■□□□ 1.32
VPS53-201ENST00000291074 SDR42E1Q8WUS8 393 aa23.32■■□□□ 1.32
VPS53-201ENST00000291074 SLC12A7Q9Y666 1083 aa23.32■■□□□ 1.32
VPS53-201ENST00000291074 SMIM22K7EJ46 135 aa23.32■■□□□ 1.32
VPS53-201ENST00000291074 IARSP41252 1262 aaKnown RBP23.32■■□□□ 1.32
VPS53-201ENST00000291074 CPLX2Q6PUV4 134 aaKnown RBP23.32■■□□□ 1.32
VPS53-201ENST00000291074 ANKRD18AQ8IVF6 992 aa23.32■■□□□ 1.32
VPS53-201ENST00000291074 MARCKSP29966 332 aaPredicted RBP23.31■■□□□ 1.32
VPS53-201ENST00000291074 SDF4Q9BRK5 362 aa23.31■■□□□ 1.32
VPS53-201ENST00000291074 NACAP1Q9BZK3 213 aa23.31■■□□□ 1.32
VPS53-201ENST00000291074 CCDC69A6NI79 296 aa23.31■■□□□ 1.32
VPS53-201ENST00000291074 LIFRP42702 1097 aa23.31■■□□□ 1.32
VPS53-201ENST00000291074 CCDC186Q7Z3E2 898 aa23.31■■□□□ 1.32
VPS53-201ENST00000291074 SLC26A6Q9BXS9 759 aa23.31■■□□□ 1.32
VPS53-201ENST00000291074 CNNM2Q9H8M5 875 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms